Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29119

Metabolite ID
P29119
Deionized mass
659.2616 Da
Average m/z
660.2707
Average RT
15.6981
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
121
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

121 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.081e-12
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)5.992e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)9.317e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.885e-13
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)2.902e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)7.769e-14
Glyma.09G057000 hypothetical protein NA 2Chr09:5140625–5145658 (+)2.182e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.164e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.872e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.872e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.93e-11
Glyma.16G062500 hypothetical protein NA 2Chr16:6099546–6105267 (-)1.611e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)8.137e-11
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)5.268e-14
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)2.773e-12
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)8.059e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)4.927e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.95e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.012e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.308e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.981e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.613e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.613e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.613e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.613e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.613e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.613e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.613e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)9.317e-12
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)2.795e-11
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)3.384e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)4.578e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.728e-16
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)2.643e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.348e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.964e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.97e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.26e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.443e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.696e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.267e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.642e-16
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.866e-11
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)8.661e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.562e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.885e-11
Glyma.06G301000 hypothetical protein NA 1Chr06:49001317–49005605 (+)8.806e-14
Glyma.06G301100 hypothetical protein AT2G16030:AT2G16030:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr06:49013527–49014231 (+)4.696e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.595e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.507e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.211e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.374e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)1.805e-11
Glyma.08G117700 hypothetical protein NA 1Chr08:9080318–9084658 (-)8.899e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)7.769e-14
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)3.08e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.697e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.43e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)3.859e-11
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)3.413e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)5.993e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.238e-11
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)2.182e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)2.44e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.971e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)5.494e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.844e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.695e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)6.218e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)7.987e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.593e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.613e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.613e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.613e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.963e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.963e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.316e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.316e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.164e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.872e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.872e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.223e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.031e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)9.955e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.362e-16
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.301e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.93e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.54e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.54e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.044e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)8.613e-18
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)6.521e-12
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)6.879e-12
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)8.922e-15
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)8.137e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.426e-14
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)4.414e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.573e-19
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)3.519e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.449e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)3.226e-13
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)1.333e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.309e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.309e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)3.394e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.116e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.069e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.923e-15
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.423e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.951e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.951e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.653e-11
Glyma.18G262800 hypothetical protein NA 1Chr18:54832649–54833890 (+)2.169e-11
Glyma.18G265900 hypothetical protein NA 1Chr18:55040041–55042737 (-)2.823e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8.269e-17
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.39e-11
Glyma.18G268000 hypothetical protein NA 1Chr18:55205656–55213313 (-)7.665e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)3.79e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)3.047e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)4.887e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)8.829e-12