Overview Annotation GWAS Evidence Associated genes

P28722

Metabolite ID
P28722
Deionized mass
276.2419 Da
Average m/z
277.2495
Average RT
15.5696
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
156
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

156 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.924e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.074e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)8.099e-11
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)2.919e-14
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)3.08e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)8.374e-15
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 2Chr07:15404178–15410144 (-)1.393e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.134e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.108e-13
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 2Chr12:34708678–34710549 (+)1.1e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)7.093e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.166e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.166e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.08e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.7e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 2Chr16:34364037–34367765 (-)3.821e-14
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)2.23e-13
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)6.318e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)4.283e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)4.597e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)5.556e-18
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)5.556e-18
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.202e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.202e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)3.247e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.706e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.887e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.972e-15
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)1.314e-14
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)5.388e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.014e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.294e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)1.449e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.365e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.663e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.84e-13
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)4.349e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.587e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)6.765e-16
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.131e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.131e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.374e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.579e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.579e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.579e-14
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)9.326e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.331e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.417e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.045e-13
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.86e-13
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)5.89e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.323e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.942e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.586e-14
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)6.685e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.413e-18
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.413e-18
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)7.501e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)9.132e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.924e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.924e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.741e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.843e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)4.787e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)4.787e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.472e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)5.085e-11
Glyma.07G129400 hypothetical protein AT3G02370:AT3G02370:tRNA-splicing endonuclease subunit__AT3G57360:AT3G57360:tRNA-splicing endonuclease subunit 1Chr07:15397826–15401368 (-)5.255e-11
Glyma.07G129700 hypothetical protein AT4G29680:AT4G29680:Alkaline-phosphatase-like family protein 1Chr07:15411976–15413873 (-)5.255e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.375e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.494e-11
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)8.003e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)2.437e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.406e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.047e-14
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)7.303e-14
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)8.576e-11
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)8.576e-11
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)8.576e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.443e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.556e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.506e-14
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)8.281e-11
Glyma.09G210200 hypothetical protein AT1G31940:AT1G31940:cystic fibrosis transmembrane conductance regulator 1Chr09:43432969–43437575 (-)7.877e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)4.161e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)8.208e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.133e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)9.212e-11
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)1.111e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)9.248e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)9.248e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)9.248e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)5.84e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.116e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.116e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)7.713e-11
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)5.621e-11
Glyma.12G186300 hypothetical protein NA 1Chr12:34717587–34719271 (+)6.205e-11
Glyma.12G186400 hypothetical protein AT5G22350:ELM1:fission ELM1-like protein (DUF1022) 1Chr12:34720712–34724838 (+)6.205e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.839e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.839e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.091e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.385e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.385e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.345e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)8.606e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.148e-14
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.074e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.403e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.299e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.3e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.166e-15
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.974e-11
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)1.175e-13
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)6.876e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.27e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)2.816e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.816e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.703e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.237e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.324e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.333e-11
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)2.811e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.831e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.488e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.474e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.742e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)7.656e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.665e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.572e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)4.517e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.209e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.359e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.359e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.455e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.455e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)8.196e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)2.231e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)1.14e-12
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)1.14e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)5.497e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)5.048e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)5.497e-11
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)9.38e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.628e-12
Glyma.18G237700 hypothetical protein AT4G01280:AT4G01280:Homeodomain-like superfamily protein 1Chr18:52631633–52637246 (-)9.34e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)1.03e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)6.378e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.984e-14
Glyma.18G259000 hypothetical protein NA 1Chr18:54442402–54446789 (-)8.016e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.617e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.645e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)5.932e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.303e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.235e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.721e-12