Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28710

Metabolite ID
P28710
Deionized mass
325.2722 Da
Average m/z
326.2764
Average RT
15.5667
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)8.272e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.885e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)5.093e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.315e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.472e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.179e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.361e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.361e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)3.59e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.013e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.885e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.67e-11
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)5.338e-12
Glyma.02G063800 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr02:5720590–5724380 (+)8.165e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)2.098e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)4.807e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)6.509e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.561e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.107e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.384e-11
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)4.161e-11
Glyma.03G039900 hypothetical protein NA 1Chr03:4988423–4991582 (-)1.443e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.711e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)6.705e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.057e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.976e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.138e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.906e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.906e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.906e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.825e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.555e-12
Glyma.07G078900 hypothetical protein AT3G61080:AT3G61080:Protein kinase superfamily protein 1Chr07:7187362–7192149 (+)5.153e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.726e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.315e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.315e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.315e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.315e-12
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)1.765e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.228e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)7.574e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.956e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.392e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)4.528e-11
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)3.006e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)6.855e-14
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)1.379e-12
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)5.167e-11
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)9.019e-11
Glyma.11G224000 hypothetical protein NA 1Chr11:31892279–31894201 (-)2.823e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.179e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.872e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.872e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.361e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.18e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)1.742e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.179e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.161e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)9.013e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.497e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.038e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.582e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.01e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.946e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.936e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.926e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)5.133e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)5.633e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.88e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.88e-11
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)3.46e-11
Glyma.18G107800 hypothetical protein AT1G06500:AT1G06500:uncharacterized protein 1Chr18:12208710–12212011 (-)2.35e-12
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 1Chr18:12220182–12260477 (+)2.35e-12
Glyma.18G108000 hypothetical protein NA 1Chr18:12221736–12225257 (-)2.35e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)9.083e-11
Glyma.20G002800 hypothetical protein NA 1Chr20:259703–260884 (+)1.899e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)4.128e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)7.613e-11