Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P28433

Metabolite ID
P28433
Deionized mass
615.1588 Da
Average m/z
616.1651
Average RT
15.4967
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.001e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)9.082e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)4.593e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)1.865e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.985e-15
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.001e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.102e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.841e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.936e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.936e-11
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)3.918e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.716e-13
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)8.001e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)7.055e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.472e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.491e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.608e-11
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 1Chr06:18712866–18716868 (+)3.96e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.244e-12
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)2.772e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.502e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.298e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.101e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.315e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.835e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.618e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.75e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.008e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.52e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.428e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.428e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.428e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.428e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)3.014e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.329e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)8.906e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.286e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)4.593e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)4.593e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.666e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.869e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.866e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.252e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)7.349e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.758e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.758e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.764e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.764e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)3.267e-11
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)6.387e-11
Glyma.20G235400 hypothetical protein AT4G34910:AT4G34910:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr20:46801199–46803834 (-)1.049e-11