Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27570

Metabolite ID
P27570
Deionized mass
514.1991 Da
Average m/z
515.2068
Average RT
15.2542
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
150
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

150 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.11G166200 hypothetical protein NA 5Chr11:15951003–15963149 (-)2.379e-14
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)3.721e-11
Glyma.11G167800 hypothetical protein NA 3Chr11:16649420–16666371 (+)2.379e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.732e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)4.343e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.191e-18
Glyma.06G205100 hypothetical protein NA 2Chr06:19392099–19394901 (+)3.158e-11
Glyma.06G206000 hypothetical protein AT5G08110:AT5G08110:UBQ, helicase-c and DEAD-like helicase domain-containing protein 2Chr06:19693187–19711341 (-)3.572e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)1.978e-12
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 2Chr10:40628401–40633140 (-)8.66e-11
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 2Chr11:15941545–15948932 (+)2.379e-14
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 2Chr11:18345392–18359356 (-)2.379e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.751e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.413e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.295e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.601e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.313e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)7.583e-13
Glyma.03G007900 hypothetical protein NA 1Chr03:764330–766878 (-)3.385e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)3.055e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.448e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.068e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.441e-11
Glyma.03G042300 hypothetical protein NA 1Chr03:5350737–5353536 (-)2.916e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.353e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)8.833e-11
Glyma.05G003100 hypothetical protein NA 1Chr05:218330–220043 (+)4.497e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.611e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.611e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.131e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.961e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.961e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.961e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.203e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.709e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.673e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.916e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.295e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.055e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.235e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.831e-19
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.831e-19
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)6.807e-12
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 1Chr06:18712866–18716868 (+)2.856e-14
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)1.39e-11
Glyma.06G205000 hypothetical protein AT5G60940:AT5G60940:Transducin/WD40 repeat-like superfamily protein 1Chr06:19370642–19375687 (-)3.158e-11
Glyma.06G205800 AP1A agamous-like MADS-box AT5G60910:AGL8:AGAMOUS-like 8 1Chr06:19583729–19590906 (+)3.572e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)4.261e-12
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)4.261e-12
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)4.261e-12
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)4.261e-12
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)4.261e-12
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)4.261e-12
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)4.261e-12
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)4.261e-12
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)4.261e-12
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)4.261e-12
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)4.526e-12
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)4.526e-12
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)4.526e-12
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)2.654e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.278e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.274e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.278e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.278e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.273e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)6.671e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.78e-13
Glyma.07G033200 hypothetical protein AT1G52770:AT1G52770:Phototropic-responsive NPH3 family protein 1Chr07:2603812–2606511 (+)7.657e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.437e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)1.587e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)1.587e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.392e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.711e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)8.543e-11
Glyma.08G141100 hypothetical protein AT5G64910:AT5G64910:Serine/Threonine-kinase 1Chr08:10778910–10784589 (-)4.813e-13
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)4.513e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.791e-13
Glyma.08G336900 hypothetical protein AT1G55730:CAX5:cation exchanger 5 1Chr08:45376142–45387404 (-)7.157e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.913e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.89e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.449e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.449e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.45e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.45e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)3.197e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.535e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.276e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.009e-14
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.009e-14
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.009e-14
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.009e-14
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)8.299e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)2.43e-11
Glyma.11G165300 hypothetical protein AT3G18220:LPP4:Phosphatidic acid phosphatase (PAP2) family protein 1Chr11:15738707–15742464 (+)3.428e-12
Glyma.11G165400 hypothetical protein NA 1Chr11:15755004–15756199 (+)3.428e-12
Glyma.11G165500 hypothetical protein NA 1Chr11:15756251–15760166 (+)3.428e-12
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)2.379e-14
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)2.379e-14
Glyma.11G167200 hypothetical protein AT5G58550:EOL2:ETO1-like 2 1Chr11:16317737–16322178 (-)4.534e-11
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)2.379e-14
Glyma.11G169000 hypothetical protein AT5G42140:AT5G42140:Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein 1Chr11:17630347–17635221 (-)4.534e-11
Glyma.11G169100 hypothetical protein NA 1Chr11:17689415–17689861 (+)4.534e-11
Glyma.11G169300 hypothetical protein AT2G30080:ZIP6:ZIP metal ion transporter family 1Chr11:17933930–17936688 (+)4.534e-11
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)2.379e-14
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)2.379e-14
Glyma.11G169900 hypothetical protein AT2G30070:KT1:potassium transporter 1 1Chr11:18079371–18084598 (-)4.534e-11
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)2.379e-14
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)2.379e-14
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)2.379e-14
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)2.379e-14
Glyma.11G171500 hypothetical protein NA 1Chr11:18629660–18631015 (+)2.663e-11
Glyma.11G171800 hypothetical protein NA 1Chr11:18663180–18666591 (-)2.663e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.983e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.983e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.015e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.015e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.707e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.779e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.779e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.992e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.992e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)5.57e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.271e-14
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.096e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.413e-12
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)7.492e-12
Glyma.15G150400 hypothetical protein AT3G06840:AT3G06840:uncharacterized protein 1Chr15:12436393–12437800 (-)7.636e-12
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)1.84e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)6.773e-14
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)8.765e-11
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)6.543e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)2.116e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.216e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)4.343e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)4.343e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.535e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.922e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.99e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.686e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.062e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.062e-12
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)1.377e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)3.332e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)4.987e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.541e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.541e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.392e-11
Glyma.20G114400 hypothetical protein AT1G68585:AT1G68585:uncharacterized protein 1Chr20:35614355–35616709 (-)1.886e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)4.292e-11