Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P27429

Metabolite ID
P27429
Deionized mass
553.1215 Da
Average m/z
554.1278
Average RT
15.2144
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.192e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)2.205e-13
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)8.079e-14
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.205e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.887e-15
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.192e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.591e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)8.527e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)3.185e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.918e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.918e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.822e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.314e-14
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)8.522e-11
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)2.223e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)2.554e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)5.476e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)5.962e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.007e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.186e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.362e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.2e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.088e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.009e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)4.559e-12
Glyma.08G117900 hypothetical protein AT3G19810:AT3G19810:BTB/POZ domain protein, putative (DUF177) 1Chr08:9093315–9095448 (+)7.666e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.559e-12
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)7.425e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.375e-11
Glyma.08G336900 hypothetical protein AT1G55730:CAX5:cation exchanger 5 1Chr08:45376142–45387404 (-)2.055e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)8.084e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.682e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.803e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.568e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.086e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.679e-15
Glyma.10G229600 hypothetical protein AT4G23630:BTI1:VIRB2-interacting protein 1 1Chr10:45968793–45973482 (-)6.373e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.149e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)8.056e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)1.382e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)4.878e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.141e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.756e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.738e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.105e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.738e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.738e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.811e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.474e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)3.371e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.275e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.952e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.659e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.448e-12
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)1.752e-12
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)7.054e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.369e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)6.24e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.064e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.564e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.179e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.179e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)1.792e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.569e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.569e-11
Glyma.20G058300 hypothetical protein AT2G31340:emb1381:embryo defective 1381 1Chr20:17536634–17556845 (-)3.45e-11
Glyma.20G058500 hypothetical protein AT5G35690:AT5G35690:zinc metalloproteinase-like protein 1Chr20:17704024–17732890 (-)3.45e-11
Glyma.20G058600 hypothetical protein NA 1Chr20:17714996–17723526 (-)3.45e-11
Glyma.20G058900 hypothetical protein NA 1Chr20:17856607–17870302 (-)3.45e-11
Glyma.20G059000 hypothetical protein AT4G12650:AT4G12650:Endomembrane protein 70 protein family 1Chr20:17864634–17867799 (+)3.45e-11
Glyma.20G060000 hypothetical protein AT2G04360:AT2G04360:uncharacterized protein 1Chr20:18396137–18402016 (+)3.45e-11
Glyma.20G061600 hypothetical protein AT4G12680:AT4G12680:uncharacterized protein 1Chr20:19167408–19171993 (-)3.45e-11
Glyma.20G061900 hypothetical protein NA 1Chr20:19276438–19277943 (-)3.45e-11
Glyma.20G062200 hypothetical protein NA 1Chr20:19517781–19521218 (-)3.45e-11
Glyma.20G064100 hypothetical protein NA 1Chr20:21538873–21551968 (+)3.45e-11
Glyma.20G065200 hypothetical protein AT4G14965:MAPR4:membrane-associated progesterone binding protein 4 1Chr20:23032161–23039465 (+)3.45e-11
Glyma.20G065700 hypothetical protein NA 1Chr20:23270247–23273003 (+)3.45e-11
Glyma.20G066100 NRP-A AT5G42050:AT5G42050:DCD (Development and Cell Death) domain protein 1Chr20:23415656–23418864 (-)3.45e-11