Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25974

Metabolite ID
P25974
Deionized mass
788.2214 Da
Average m/z
789.2244
Average RT
14.8263
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
120
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

120 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.797e-11
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)8.157e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.453e-12
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)3.201e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.387e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.208e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)4.934e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.972e-16
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.972e-16
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.972e-16
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.304e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.366e-12
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)7.614e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.851e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.851e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.402e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.832e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.453e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.865e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.921e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)7.539e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)8.959e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.817e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)6.935e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.232e-13
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)9.198e-12
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)8.814e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.268e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.073e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.116e-15
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)2.75e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.563e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.171e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)6.193e-12
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)2.538e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.771e-12
Glyma.06G112500 hypothetical protein AT1G77630:LYM3:Peptidoglycan-binding LysM domain-containing protein 1Chr06:9126878–9129754 (-)4.791e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.771e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.77e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)9.065e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.765e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)9.065e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)9.064e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.765e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)7.152e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)7.152e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)6.929e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.201e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.201e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.201e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.201e-14
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)3.802e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)3.802e-11
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)2.559e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.754e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.754e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.696e-15
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)9.472e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)9.472e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.036e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.356e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.571e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.972e-16
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.972e-16
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.972e-16
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)3.002e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.972e-16
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.972e-16
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)7.47e-15
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.802e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.802e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.802e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.802e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.813e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.812e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.913e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.747e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.747e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)9.306e-11
Glyma.13G052100 hypothetical protein NA 1Chr13:14902730–14924713 (-)1.588e-12
Glyma.13G052800 hypothetical protein NA 1Chr13:15005141–15009623 (+)2.421e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.55e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.55e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.851e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.67e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)5.255e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)3.646e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)1.055e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.402e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.662e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.04e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.662e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.662e-13
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)2.863e-11
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)1.077e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.724e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)3.797e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)3.922e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.4e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)8.157e-14
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)8.157e-14
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)8.157e-14
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)8.157e-14
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)5.787e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.913e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)6.538e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.208e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.208e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.494e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.39e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.189e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)1.402e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.385e-14
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.139e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.786e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.786e-14
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)5.568e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.755e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.055e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.504e-11