Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25341

Metabolite ID
P25341
Deionized mass
329.1779 Da
Average m/z
330.1831
Average RT
14.6761
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
146
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

146 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 4Chr03:2202325–2234931 (+)8.019e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)4.922e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)3.775e-12
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.541e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)4.64e-15
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)6.296e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)7.706e-15
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)3.078e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)4.847e-14
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)6.604e-14
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.598e-14
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.598e-14
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.598e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.83e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.213e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.707e-11
Glyma.16G178800 hypothetical protein NA 2Chr16:33950003–33953968 (-)3.234e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.613e-15
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)7.829e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)4.872e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.533e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)5.357e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)3.065e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.201e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.986e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)5.124e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.102e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.102e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)2.192e-11
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)1.588e-13
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)4.455e-13
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)8.572e-12
Glyma.03G017000 hypothetical protein AT3G61060:PP2-A13:phloem protein 2-A13 1Chr03:1716204–1719596 (+)7.326e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.012e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.488e-13
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)5.702e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)1.504e-12
Glyma.03G245100 hypothetical protein AT1G54500:AT1G54500:Rubredoxin-like superfamily protein 1Chr03:44246906–44248269 (-)8.168e-11
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)6.295e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.787e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.911e-13
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.014e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.058e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.695e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.088e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.308e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.432e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.521e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.924e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.924e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)4.798e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.374e-16
Glyma.06G276300 hypothetical protein NA 1Chr06:46741410–46744086 (-)1.982e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.131e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.618e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)3.549e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)3.549e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)6.352e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.999e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)6.611e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)1.602e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.847e-14
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)7.147e-11
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)4.524e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.294e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.703e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.854e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.668e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.615e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.713e-14
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)2.775e-11
Glyma.09G209200 hypothetical protein AT1G32160:AT1G32160:beta-casein (DUF760) 1Chr09:43361634–43365478 (-)5.667e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.802e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)8.711e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.249e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.84e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.259e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.496e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.598e-14
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.598e-14
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.598e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.357e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.598e-14
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.598e-14
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)5.957e-14
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.083e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.62e-13
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.389e-15
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.753e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.753e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.878e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.878e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.772e-13
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)3.669e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.695e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.002e-14
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.707e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)6.994e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.289e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.929e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.289e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.289e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.254e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.819e-13
Glyma.16G055000 hypothetical protein NA 1Chr16:5411241–5413143 (-)2.579e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.328e-12
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)6.083e-11
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)5.589e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.346e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.902e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.738e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)7.23e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.798e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.923e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)1.643e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.486e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.325e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.862e-14
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)4.83e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)4.83e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)1.495e-12
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)4.354e-11
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)4.354e-11
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)4.354e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.64e-15
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.866e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.217e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.56e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)7.079e-14
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)7.079e-14
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.371e-14
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.357e-14
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.371e-14
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)9.96e-16
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)8.64e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.977e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.311e-11
Glyma.18G299500 hypothetical protein AT2G43160:AT2G43160:ENTH/VHS family protein 1Chr18:57741567–57749794 (+)3.485e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)5.408e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.267e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.872e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.35e-18
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.35e-18
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.28e-12
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)9.882e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.648e-11