Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25040

Metabolite ID
P25040
Deionized mass
274.0733 Da
Average m/z
275.0817
Average RT
14.5993
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 5Chr03:169480–172727 (+)2.25e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.767e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.122e-13
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 3Chr19:5178930–5212367 (+)6.242e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)2.162e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.614e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.75e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)9.204e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.629e-12
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)3.72e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.767e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.221e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.851e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.296e-12
Glyma.03G001700 hypothetical protein NA 1Chr03:187374–191041 (+)8.982e-13
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)1.115e-12
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)1.115e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.079e-13
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)6.795e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.933e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.755e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.162e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.016e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.158e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.158e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.158e-15
Glyma.05G156400 hypothetical protein AT4G38500:AT4G38500:Sept9 (DUF616) 1Chr05:34887406–34892486 (+)5.206e-11
Glyma.05G156500 hypothetical protein NA 1Chr05:34893768–34898039 (-)5.206e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.135e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.744e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.425e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)8.679e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.544e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.544e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.544e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.544e-11
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)5.475e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.508e-11
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)5.475e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.558e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.7e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.7e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.541e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.541e-11
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)4.727e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.477e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.629e-12
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)1.719e-12
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)2.228e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)8.062e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.187e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.187e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.187e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)1.321e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)6.009e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)3.202e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.613e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.238e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.082e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.718e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.667e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.273e-11
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)9.48e-13
Glyma.16G172800 hypothetical protein AT3G49142:AT3G49142:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:33359317–33362446 (+)6.427e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.876e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.676e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.381e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)9.2e-14
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)3.269e-11
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)6.242e-11
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)6.242e-11
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)6.242e-11
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)6.242e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.766e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.892e-11