P24957
Metabolite ID
P24957
Deionized mass
482.2104 Da
Average m/z
483.2177
Average RT
14.5701
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
102
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
102 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.16G145600 | hypothetical protein | AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… | 4 | Chr16:30652378–30659548 (+) | 8.092e-13 | |
| Glyma.16G180800 | hypothetical protein | AT1G02260:AT1G02260:Divalent ion symporter | 4 | Chr16:34164228–34171821 (+) | 1.112e-13 | |
| Glyma.16G118400 | hypothetical protein | AT2G17190:AT2G17190:ubiquitin family protein | 3 | Chr16:26356863–26371741 (-) | 2.81e-11 | |
| Glyma.16G181200 | hypothetical protein | NA | 3 | Chr16:34216133–34221470 (-) | 7.163e-12 | |
| Glyma.16G181300 | hypothetical protein | NA | 3 | Chr16:34225053–34233073 (-) | 9.02e-12 | |
| Glyma.07G021800 | hypothetical protein | AT1G80920:J8:Chaperone DnaJ-domain superfamily protein | 2 | Chr07:1697119–1698666 (+) | 8.852e-12 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 2 | Chr12:36289704–36295084 (-) | 9.008e-16 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 2 | Chr12:36406747–36413696 (+) | 8.307e-14 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 5.891e-16 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 7.041e-12 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 7.041e-12 | |
| Glyma.14G149300 | hypothetical protein | NA | 2 | Chr14:32235308–32258014 (+) | 3.603e-12 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 2 | Chr16:26324650–26336836 (+) | 4.626e-12 | |
| Glyma.16G173600 | hypothetical protein | AT5G24030:SLAH3:SLAC1 homologue 3 | 2 | Chr16:33407719–33412908 (-) | 3.91e-12 | |
| Glyma.16G177400 | hypothetical protein | NA | 2 | Chr16:33858373–33865573 (+) | 1.49e-11 | |
| Glyma.16G180200 | hypothetical protein | NA | 2 | Chr16:34077613–34081734 (+) | 1.708e-12 | |
| Glyma.16G180600 | hypothetical protein | AT5G52430:AT5G52430:hydroxyproline-rich glycoprotein family protein | 2 | Chr16:34129875–34134314 (+) | 2.517e-11 | |
| Glyma.16G181100 | hypothetical protein | NA | 2 | Chr16:34198761–34209007 (-) | 2.359e-11 | |
| Glyma.03G016700 | hypothetical protein | AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr03:1683395–1688893 (-) | 8.507e-11 | |
| Glyma.03G019700 | hypothetical protein | AT3G61130:GAUT1:galacturonosyltransferase 1 | 1 | Chr03:2010835–2018418 (+) | 5.743e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 6.049e-12 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 2.205e-11 | |
| Glyma.05G034000 | hypothetical protein | AT4G03400:DFL2:Auxin-responsive GH3 family protein | 1 | Chr05:2965889–2971412 (-) | 3.838e-12 | |
| Glyma.05G103700 | hypothetical protein | NA | 1 | Chr05:27632520–27637991 (+) | 5.632e-11 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 4.275e-11 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 9.043e-11 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 9.044e-11 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 9.043e-11 | |
| Glyma.05G231800 | ALDH2C1 | aldehyde dehydrogenase family 2 member C1 | AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 | 1 | Chr05:40924505–40929251 (+) | 7.013e-16 |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 1.974e-17 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 1.443e-11 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 1.231e-11 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 1.231e-11 | |
| Glyma.06G203300 | hypothetical protein | AT1G18640:PSP:3-phosphoserine phosphatase | 1 | Chr06:19025714–19030363 (+) | 2.008e-12 | |
| Glyma.06G317900 | hypothetical protein | AT5G51400:AT5G51400:PLAC8 family protein | 1 | Chr06:50645095–50649256 (+) | 2.827e-13 | |
| Glyma.07G017600 | hypothetical protein | NA | 1 | Chr07:1415837–1422680 (+) | 6.993e-11 | |
| Glyma.07G018100 | hypothetical protein | NA | 1 | Chr07:1442368–1445430 (-) | 9.059e-11 | |
| Glyma.07G018300 | hypothetical protein | AT3G27750:EMB3123:PPR containing protein | 1 | Chr07:1457706–1458428 (+) | 9.059e-11 | |
| Glyma.07G021100 | hypothetical protein | NA | 1 | Chr07:1647678–1650627 (+) | 6.837e-11 | |
| Glyma.07G021600 | hypothetical protein | AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | 1 | Chr07:1673827–1680014 (-) | 6.837e-11 | |
| Glyma.07G021700 | hypothetical protein | NA | 1 | Chr07:1684537–1692320 (+) | 1.751e-11 | |
| Glyma.08G150100 | hypothetical protein | AT2G44450:BGLU15:beta glucosidase 15 | 1 | Chr08:11525692–11536927 (+) | 2.911e-12 | |
| Glyma.09G080200 | hypothetical protein | NA | 1 | Chr09:9256042–9263239 (-) | 7.683e-11 | |
| Glyma.09G209800 | hypothetical protein | NA | 1 | Chr09:43411309–43411773 (+) | 1.465e-12 | |
| Glyma.09G209900 | hypothetical protein | AT1G31930:XLG3:extra-large GTP-binding protein 3 | 1 | Chr09:43412726–43419532 (+) | 1.273e-11 | |
| Glyma.09G210000 | hypothetical protein | AT5G45620:AT5G45620:Proteasome component (PCI) domain protein | 1 | Chr09:43422744–43428344 (-) | 1.465e-12 | |
| Glyma.09G212100 | hypothetical protein | AT4G19040:EDR2:ENHANCED DISEASE RESISTANCE 2 | 1 | Chr09:43601727–43616030 (-) | 7.556e-11 | |
| Glyma.09G249500 | hypothetical protein | NA | 1 | Chr09:47056885–47062577 (+) | 2.051e-12 | |
| Glyma.09G251800 | hypothetical protein | AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein | 1 | Chr09:47220796–47224266 (+) | 1.077e-11 | |
| Glyma.10G078700 | hypothetical protein | NA | 1 | Chr10:8882318–8903950 (+) | 1.308e-11 | |
| Glyma.10G079100 | hypothetical protein | NA | 1 | Chr10:8960669–8962364 (-) | 1.308e-11 | |
| Glyma.10G079800 | hypothetical protein | NA | 1 | Chr10:9223520–9228511 (-) | 1.308e-11 | |
| Glyma.10G080000 | hypothetical protein | AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… | 1 | Chr10:9258476–9260697 (-) | 1.308e-11 | |
| Glyma.10G081200 | hypothetical protein | NA | 1 | Chr10:9600771–9603988 (-) | 7.42e-12 | |
| Glyma.10G081700 | hypothetical protein | NA | 1 | Chr10:9752508–9758422 (+) | 5.566e-11 | |
| Glyma.10G238200 | hypothetical protein | AT5G07250:RBL3:RHOMBOID-like protein 3 | 1 | Chr10:46680865–46684088 (+) | 3.68e-13 | |
| Glyma.10G238300 | hypothetical protein | AT5G07240:IQD24:IQ-domain 24 | 1 | Chr10:46688122–46693051 (-) | 7.17e-11 | |
| Glyma.10G238700 | hypothetical protein | NA | 1 | Chr10:46721439–46725173 (+) | 7.169e-11 | |
| Glyma.10G239000 | hypothetical protein | NA | 1 | Chr10:46755702–46757579 (-) | 7.17e-11 | |
| Glyma.12G098000 | hypothetical protein | NA | 1 | Chr12:8432078–8439545 (+) | 8.152e-12 | |
| Glyma.12G098200 | hypothetical protein | AT2G32480:ARASP:chloroplastic membrane metallo proteases__AT1G05140:AT1G05140:Peptidase M50 family protein | 1 | Chr12:8452063–8456493 (+) | 2.731e-11 | |
| Glyma.12G098300 | hypothetical protein | NA | 1 | Chr12:8458112–8459817 (+) | 8.152e-12 | |
| Glyma.12G202200 | hypothetical protein | AT2G20860:LIP1:lipoic acid synthase 1 | 1 | Chr12:36267599–36271584 (+) | 1.372e-17 | |
| Glyma.12G202300 | hypothetical protein | NA | 1 | Chr12:36275438–36276838 (+) | 1.372e-17 | |
| Glyma.12G202700 | hypothetical protein | AT2G20875:EPF1:epidermal patterning factor 1 | 1 | Chr12:36329374–36330905 (-) | 1.601e-11 | |
| Glyma.12G203300 | hypothetical protein | AT4G03430:EMB2770:pre-mRNA splicing factor-like protein | 1 | Chr12:36371465–36377700 (-) | 2.272e-12 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 2.122e-16 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 5.891e-16 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 1.63e-12 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 5.719e-11 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 5.719e-11 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 7.041e-12 | |
| Glyma.14G094500 | hypothetical protein | NA | 1 | Chr14:8788109–8793948 (-) | 6.338e-11 | |
| Glyma.14G148800 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr14:32154755–32157298 (+) | 3.603e-12 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 1.112e-12 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 2.122e-12 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 1.112e-12 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 1.112e-12 | |
| Glyma.16G118200 | hypothetical protein | NA | 1 | Chr16:26337169–26338323 (+) | 2.81e-11 | |
| Glyma.16G118600 | hypothetical protein | NA | 1 | Chr16:26442194–26445922 (+) | 2.81e-11 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 6.155e-12 | |
| Glyma.16G121500 | hypothetical protein | NA | 1 | Chr16:27007186–27010856 (+) | 3.642e-12 | |
| Glyma.16G172800 | hypothetical protein | AT3G49142:AT3G49142:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr16:33359317–33362446 (+) | 1.156e-12 | |
| Glyma.16G176100 | hypothetical protein | AT4G11810:AT4G11810:Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | 1 | Chr16:33736100–33743654 (-) | 1.422e-11 | |
| Glyma.16G176900 | hypothetical protein | NA | 1 | Chr16:33828244–33834767 (+) | 1.49e-11 | |
| Glyma.16G177000 | hypothetical protein | NA | 1 | Chr16:33837701–33839617 (-) | 1.49e-11 | |
| Glyma.16G177700 | hypothetical protein | NA | 1 | Chr16:33877620–33880324 (-) | 5.85e-11 | |
| Glyma.16G177800 | hypothetical protein | AT5G52780:AT5G52780:transmembrane protein, putative (DUF3464) | 1 | Chr16:33882991–33884754 (+) | 7.316e-11 | |
| Glyma.16G178900 | hypothetical protein | AT4G25720:QC:glutaminyl cyclase | 1 | Chr16:33954446–33960344 (+) | 2.697e-11 | |
| Glyma.16G179100 | BCH2 | beta-carotene hydroxylase BCH2 | AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 | 1 | Chr16:33969618–33972333 (-) | 1.062e-11 |
| Glyma.16G179800 | hypothetical protein | AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein | 1 | Chr16:34022480–34027055 (-) | 2.499e-19 | |
| Glyma.16G180400 | hypothetical protein | AT5G23950:AT5G23950:Calcium-dependent lipid-binding (CaLB domain) family protein | 1 | Chr16:34093033–34094634 (+) | 2.743e-14 | |
| Glyma.16G181500 | hypothetical protein | NA | 1 | Chr16:34246093–34253876 (+) | 4.52e-11 | |
| Glyma.16G196900 | hypothetical protein | NA | 1 | Chr16:35841279–35846894 (-) | 2.26e-11 | |
| Glyma.16G208400 | hypothetical protein | NA | 1 | Chr16:36789890–36801967 (-) | 3.208e-11 | |
| Glyma.16G219700 | hypothetical protein | NA | 1 | Chr16:37690133–37695529 (-) | 4.211e-11 | |
| Glyma.17G144400 | hypothetical protein | NA | 1 | Chr17:11801158–11803913 (+) | 8.268e-11 | |
| Glyma.17G144600 | hypothetical protein | NA | 1 | Chr17:11840299–11840904 (+) | 1.698e-11 | |
| Glyma.18G201700 | hypothetical protein | NA | 1 | Chr18:48175554–48180264 (+) | 9.309e-11 | |
| Glyma.18G246900 | hypothetical protein | AT5G48370:AT5G48370:Thioesterase/thiol ester dehydrase-isomerase superfamily protein | 1 | Chr18:53429396–53432779 (-) | 9.039e-11 | |
| Glyma.20G198400 | hypothetical protein | NA | 1 | Chr20:43601702–43633244 (+) | 7.559e-11 | |
| Glyma.20G198600 | hypothetical protein | AT5G51150:AT5G51150:Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | 1 | Chr20:43634710–43639892 (-) | 7.559e-11 |