Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24754

Metabolite ID
P24754
Deionized mass
282.2514 Da
Average m/z
283.2614
Average RT
14.5152
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.683e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.305e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.513e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.655e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.552e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.997e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)3.598e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)4.199e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.535e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.017e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.876e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.829e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.835e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.835e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.239e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.123e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)8.26e-11
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)3.836e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)3.215e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)4.389e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.584e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.305e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.305e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.305e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.305e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.195e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.648e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.746e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.746e-13
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.873e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.332e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.147e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.355e-13
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)3.423e-12
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.934e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.934e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.934e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.595e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.513e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)2.828e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.188e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)4.814e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.758e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)2.174e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)7.088e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.052e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.053e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)9.449e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.561e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.023e-12