Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24382

Metabolite ID
P24382
Deionized mass
503.1864 Da
Average m/z
504.1919
Average RT
14.4010
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)1.301e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)8.589e-13
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 2Chr09:42685911–42690981 (-)4.91e-17
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.045e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.045e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 2Chr14:1009519–1014238 (+)5.598e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)9.354e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)5.267e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.275e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.515e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.515e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.515e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)8.052e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.568e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.568e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.362e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.377e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.484e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.75e-12
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)4.874e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)8.484e-11
Glyma.07G073100 hypothetical protein NA 1Chr07:6656839–6661250 (-)9.053e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.075e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.075e-12
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)5.415e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)9.774e-13
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)7.916e-13
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.395e-17
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)3.107e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)5.343e-11
Glyma.09G200300 hypothetical protein NA 1Chr09:42466263–42471449 (+)6.31e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.514e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.174e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.174e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.916e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.916e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.045e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)8.405e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)2.212e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.199e-12
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)7.411e-12
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)6.059e-11
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)9.488e-11
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)9.488e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)6.87e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)6.893e-11