Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24029

Metabolite ID
P24029
Deionized mass
289.0564 Da
Average m/z
290.0625
Average RT
14.2963
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G213600 hypothetical protein NA 3Chr06:21713618–21726865 (+)2.983e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)7.641e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.641e-14
Glyma.06G211800 hypothetical protein NA 2Chr06:21237649–21239875 (+)2.983e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)6e-14
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.26e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)7.56e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.207e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.146e-12
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 1Chr06:18712866–18716868 (+)1.305e-11
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)8.554e-11
Glyma.06G204900 hypothetical protein AT1G74120:AT1G74120:Mitochondrial transcription termination factor family protein 1Chr06:19353866–19354929 (+)1.681e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)2.529e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)2.529e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)2.529e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)2.529e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)2.529e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)2.529e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)2.529e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)2.529e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)2.529e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)2.529e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)2.529e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)2.983e-11
Glyma.06G212000 hypothetical protein NA 1Chr06:21249851–21261691 (+)8.299e-11
Glyma.06G212900 hypothetical protein NA 1Chr06:21420130–21421143 (-)8.299e-11
Glyma.06G213300 hypothetical protein NA 1Chr06:21548690–21565666 (-)8.299e-11
Glyma.06G213700 hypothetical protein NA 1Chr06:21727968–21730998 (+)8.299e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.875e-14
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.636e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.875e-14
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.875e-14
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.636e-13
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)5.191e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)2.651e-12
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.051e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.051e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.256e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.755e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.741e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.428e-11
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)3.009e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.676e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.006e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)3.38e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.656e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.656e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.53e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.53e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.907e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.907e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)1.474e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)6.366e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.347e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.261e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.348e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.347e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.186e-11
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)6.832e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)4.254e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)3.581e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)6.996e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.641e-14
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.641e-14
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.79e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.829e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.498e-13
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.26e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.544e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.26e-13
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)8.991e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)5.854e-11
Glyma.19G040100 hypothetical protein AT3G02460:AT3G02460:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr19:5773912–5781906 (-)5.793e-12
Glyma.19G041000 hypothetical protein NA 1Chr19:5964641–5965947 (-)5.793e-12
Glyma.20G236700 hypothetical protein AT3G05545:AT3G05545:RING/U-box superfamily protein 1Chr20:46886326–46894385 (+)4.976e-11