Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21627

Metabolite ID
P21627
Deionized mass
360.5728 Da
Average m/z
361.5795
Average RT
13.6244
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
99
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

99 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.189e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.569e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.23e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.852e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.546e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.95e-15
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.005e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.648e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.569e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.121e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.074e-11
Glyma.01G153200 hypothetical protein AT1G31730:AT1G31730:Adaptin family protein 1Chr01:49031976–49040525 (+)6.114e-11
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)3.215e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.657e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)8.238e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.553e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)6.82e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)3.754e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.352e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.958e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.234e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.779e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.329e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.896e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.605e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.605e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.605e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.257e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.257e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)2.422e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.932e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.9e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.932e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.932e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.9e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)5.131e-13
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)2.059e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)8.679e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)8.679e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.596e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)7.125e-13
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)2.951e-12
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)9.097e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.167e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.167e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.167e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.167e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.248e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.791e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)2.873e-12
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)2.899e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.785e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.785e-12
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)4.311e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.408e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.408e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.746e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.546e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.744e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.164e-12
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)4.896e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)8.586e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.194e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.402e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.402e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.402e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.201e-12
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)2.09e-11
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)1.141e-11
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)1.141e-11
Glyma.14G191000 hypothetical protein AT2G29590:AT2G29590:Thioesterase superfamily protein 1Chr14:45577040–45578743 (-)7.007e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.583e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.583e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.192e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.57e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.193e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.192e-12
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)3.033e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.189e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)3.412e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.23e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.23e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.23e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.23e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)6.235e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.004e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.119e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.629e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.629e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.517e-12
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)5.402e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)5.416e-12
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)4.013e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)5.36e-11
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 1Chr20:45428471–45432099 (+)2.409e-11
Glyma.20G235000 hypothetical protein NA 1Chr20:46759449–46761441 (+)1.903e-11
Glyma.20G235300 hypothetical protein AT1G09060:AT1G09060:JmjC domain protein JMJ24 1Chr20:46790436–46798140 (-)1.413e-11
Glyma.20G235400 hypothetical protein AT4G34910:AT4G34910:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr20:46801199–46803834 (-)1.413e-11
Glyma.20G236700 hypothetical protein AT3G05545:AT3G05545:RING/U-box superfamily protein 1Chr20:46886326–46894385 (+)3.524e-11