Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21412

Metabolite ID
P21412
Deionized mass
506.3413 Da
Average m/z
507.3481
Average RT
13.5627
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
132
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

132 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.468e-13
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)7.667e-11
Glyma.07G095000 hypothetical protein NA 3Chr07:8843665–8855430 (+)1.477e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 3Chr07:9523110–9526319 (+)1.698e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.217e-13
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.728e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)7.161e-13
Glyma.07G068800 hypothetical protein NA 2Chr07:6211775–6221107 (-)7.365e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)4.606e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.239e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.771e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.771e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 2Chr13:31727841–31735910 (-)3.746e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 2Chr14:1009519–1014238 (+)6.511e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.118e-14
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.514e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)2.824e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)6.88e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.17e-15
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)2.769e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)4.912e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)4.558e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.757e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.757e-11
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr02:5645621–5648965 (+)6.298e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.968e-11
Glyma.03G007100 hypothetical protein AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… 1Chr03:647777–651152 (-)3.994e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)2.159e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)7.429e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)7.192e-13
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)6.728e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.004e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.333e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.65e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)1.476e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)2.183e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.789e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.401e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.544e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.467e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.48e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.831e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.831e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.339e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.02e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.02e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.02e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)5.926e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)4.707e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)9.347e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.575e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.353e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.759e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.015e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.015e-14
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.47e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.697e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)7.078e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.737e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)2.791e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.867e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.728e-14
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)5.294e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.74e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.746e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)1.95e-11
Glyma.08G141100 hypothetical protein AT5G64910:AT5G64910:Serine/Threonine-kinase 1Chr08:10778910–10784589 (-)3.118e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)8.864e-11
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)6.915e-11
Glyma.08G294800 hypothetical protein AT1G59710:AT1G59710:actin cross-linking protein (DUF569) 1Chr08:40993962–41001629 (+)1.607e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.861e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.047e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.981e-14
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)4.856e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)5.078e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.004e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.73e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.73e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.73e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.73e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.962e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.107e-13
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.549e-11
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)5.072e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.653e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.335e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.335e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.294e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.294e-15
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.172e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.239e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.267e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.267e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.771e-12
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)3.419e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.547e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)3.746e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.72e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.223e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.208e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.978e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.781e-20
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.711e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.711e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)8.577e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.235e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.118e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.542e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.881e-17
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.449e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.514e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.65e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)6.518e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.598e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.544e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.019e-13
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)4.998e-11
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)1.061e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.506e-12
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)4.827e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.247e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.217e-13
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)1.324e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)1.115e-12
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)6.153e-12
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)6.153e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)6.793e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.912e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.984e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.984e-13
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)7.172e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)5.298e-11