Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20462

Metabolite ID
P20462
Deionized mass
398.1535 Da
Average m/z
399.1584
Average RT
13.3130
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 3Chr08:10843433–10846761 (-)8.333e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.783e-12
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)1.268e-17
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)2.862e-20
Glyma.08G144000 hypothetical protein NA 2Chr08:10981530–10989743 (+)3.728e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.305e-12
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)2.765e-12
Glyma.01G231700 hypothetical protein AT4G10180:DET1:light-mediated development protein 1 / deetiolated1 (DET1) 1Chr01:55856415–55863866 (+)5.196e-11
Glyma.01G231900 hypothetical protein AT1G71500:AT1G71500:Rieske (2Fe-2S) domain-containing protein 1Chr01:55869836–55872417 (+)3.264e-11
Glyma.04G084600 hypothetical protein NA 1Chr04:7171949–7173688 (+)3.376e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.941e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.881e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.037e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.419e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.565e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)1.171e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)3.23e-12
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)2.198e-12
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)1.266e-11
Glyma.08G116800 hypothetical protein AT1G29240:AT1G29240:transcription initiation factor TFIID subunit, putative (DUF688) 1Chr08:9006479–9010442 (-)5.725e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)4.287e-16
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.862e-20
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)6.101e-15
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)4.292e-14
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.664e-15
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)8.333e-12
Glyma.08G142500 hypothetical protein NA 1Chr08:10848944–10850129 (+)5.26e-11
Glyma.08G143000 hypothetical protein AT3G57940:AT3G57940:GNAT acetyltransferase (DUF699)__AT1G10490:AT1G10490:GNAT acetyltransferase (DUF699) 1Chr08:10872816–10885213 (-)3.728e-11
Glyma.08G143200 hypothetical protein AT4G39420:AT4G39420:spatacsin carboxy-terminus protein 1Chr08:10898111–10922975 (-)3.728e-11
Glyma.08G144600 hypothetical protein NA 1Chr08:10997491–11002758 (+)3.728e-11
Glyma.08G144700 hypothetical protein NA 1Chr08:11004138–11009322 (-)3.728e-11
Glyma.08G147300 hypothetical protein NA 1Chr08:11238871–11242682 (+)1.837e-11
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)1.913e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)7.036e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)1.794e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)8.089e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)6.814e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.783e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.783e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.783e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.783e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.461e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.547e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)9.223e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.391e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.391e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.748e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)6.49e-11