Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19718

Metabolite ID
P19718
Deionized mass
392.1737 Da
Average m/z
393.1777
Average RT
13.1043
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G180800 hypothetical protein AT1G02260:AT1G02260:Divalent ion symporter 3Chr16:34164228–34171821 (+)1.456e-13
Glyma.16G181300 hypothetical protein NA 3Chr16:34225053–34233073 (-)7.429e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.334e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.486e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.204e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.531e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.531e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.134e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)7.445e-13
Glyma.16G180600 hypothetical protein AT5G52430:AT5G52430:hydroxyproline-rich glycoprotein family protein 2Chr16:34129875–34134314 (+)4.561e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.107e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)7.562e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.082e-13
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)2.405e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)2.405e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.847e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.299e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.168e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.556e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.556e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.677e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.186e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.384e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)1.525e-11
Glyma.11G020900 hypothetical protein NA 1Chr11:1482644–1490708 (+)3.495e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.598e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.565e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.565e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.565e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.763e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.763e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.745e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.631e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.277e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.277e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.796e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.204e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.133e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.133e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.531e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.134e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.59e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.624e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.59e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.59e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.705e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)5.177e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)6.638e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)7.445e-13
Glyma.16G172800 hypothetical protein AT3G49142:AT3G49142:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:33359317–33362446 (+)9.921e-11
Glyma.16G176100 hypothetical protein AT4G11810:AT4G11810:Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 1Chr16:33736100–33743654 (-)1.544e-11
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)1.671e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.54e-19
Glyma.16G180200 hypothetical protein NA 1Chr16:34077613–34081734 (+)1.954e-12
Glyma.16G180400 hypothetical protein AT5G23950:AT5G23950:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr16:34093033–34094634 (+)3.304e-13
Glyma.16G181200 hypothetical protein NA 1Chr16:34216133–34221470 (-)7.703e-12
Glyma.16G181500 hypothetical protein NA 1Chr16:34246093–34253876 (+)4.252e-11
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)3.855e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)1.838e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.107e-11
Glyma.17G217900 hypothetical protein NA 1Chr17:36771760–36778616 (-)3.498e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.62e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.62e-11