Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19352

Metabolite ID
P19352
Deionized mass
742.1996 Da
Average m/z
743.2109
Average RT
13.0218
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
139
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

139 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)9.577e-16
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.277e-16
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)5.234e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.607e-12
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 2Chr02:5645621–5648965 (+)3.418e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)2.794e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)8.822e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.334e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.38e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.774e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.774e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.164e-15
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.966e-12
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)2.843e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)6.92e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)4.624e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.277e-16
Glyma.02G067600 hypothetical protein NA 1Chr02:5975111–5976381 (+)4.938e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.733e-11
Glyma.02G176800 hypothetical protein AT5G06839:TGA10:bZIP transcription factor family protein 1Chr02:29019977–29028838 (-)2.283e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)5.438e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.201e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)9.586e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.841e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.369e-18
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)3.859e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.453e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)6.862e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.829e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.458e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.691e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.436e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.436e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.436e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)6.997e-13
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)9.048e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.826e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.162e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.529e-17
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)3.704e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)3.704e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.131e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.131e-16
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.545e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.173e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.895e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.173e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.173e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.895e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.187e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.994e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)2.769e-11
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)2.669e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.966e-14
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)2.611e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)2.573e-12
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)2.611e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.578e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.785e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.605e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)4.719e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.1e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.384e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.252e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.24e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.24e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.24e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.24e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.12e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.085e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.514e-17
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.514e-17
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.514e-17
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)6.612e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.25e-11
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)1.176e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.931e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.38e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.356e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.709e-13
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)1.076e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.234e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.548e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.188e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.188e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.774e-13
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)2.519e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.229e-12
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)4.363e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.164e-15
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)2.938e-14
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)5.137e-13
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)5.137e-13
Glyma.14G203000 hypothetical protein AT2G30360:SIP4:SOS3-interacting protein 4 1Chr14:46787303–46790554 (-)7.154e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)9.329e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.114e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.15e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.634e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.15e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.15e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.006e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.351e-14
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)1.092e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.444e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.577e-16
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)9.168e-14
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)3.731e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)9.431e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.607e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.607e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.607e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.607e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)7.967e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.213e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.87e-14
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.138e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.297e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.156e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)4.151e-11
Glyma.16G141500 bZIP117 AT4G36730:GBF1:G-box binding factor 1 1Chr16:29960697–29967081 (-)4.714e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)4.005e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)3.656e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)7.337e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.76e-13
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)1.202e-11
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)1.202e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)9.696e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)8.804e-13
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.749e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.607e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.607e-15
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.771e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)7.361e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.162e-12
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)3.044e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)4.286e-13
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)3.479e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.267e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.342e-14