Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18868

Metabolite ID
P18868
Deionized mass
520.2059 Da
Average m/z
521.2147
Average RT
12.8659
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
100
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

100 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.676e-15
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.571e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)5.507e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.319e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)3.127e-13
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)4.142e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.918e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)6.171e-11
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)9.586e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.882e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.061e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.998e-15
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.231e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.277e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.587e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.587e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.244e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.202e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.202e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.202e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)8.373e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.467e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.236e-12
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)7.973e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.382e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.321e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.297e-12
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)1.594e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.115e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.115e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.115e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.966e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.966e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.034e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.81e-14
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)8.968e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)4.142e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)3.239e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.716e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.716e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.216e-14
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.105e-11
Glyma.07G033700 hypothetical protein AT1G52820:AT1G52820:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1Chr07:2636344–2637789 (+)5.29e-11
Glyma.07G034300 hypothetical protein NA 1Chr07:2701469–2717662 (-)1.719e-13
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)5.182e-12
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)5.182e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.818e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)8.38e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)6.011e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.407e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.987e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.956e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)6.508e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.633e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.214e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.874e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.624e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.624e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.624e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.202e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.202e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)3.785e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.232e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.676e-15
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)2.071e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.314e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.314e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.314e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.314e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.319e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.194e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.333e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.194e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.193e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.685e-12
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)2.705e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)1.014e-12
Glyma.16G042100 hypothetical protein NA 1Chr16:3931670–3933390 (-)2.141e-11
Glyma.16G042200 hypothetical protein AT2G23840:AT2G23840:HNH endonuclease 1Chr16:3933842–3940818 (+)2.141e-11
Glyma.16G042600 hypothetical protein AT5G18230:AT5G18230:transcription regulator NOT2/NOT3/NOT5 family protein 1Chr16:3964264–3976083 (-)6.148e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.571e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.571e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.571e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.571e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.531e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.578e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.019e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.907e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.114e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)7.112e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.567e-13
Glyma.17G112200 hypothetical protein AT5G52580:AT5G52580:RabGAP/TBC domain-containing protein 1Chr17:8837513–8848411 (+)4.155e-12
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)2.772e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.771e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)8.961e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)5.156e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.569e-11
Glyma.20G236700 hypothetical protein AT3G05545:AT3G05545:RING/U-box superfamily protein 1Chr20:46886326–46894385 (+)3.765e-11
Glyma.20G237300 hypothetical protein AT5G27830:AT5G27830:folate receptor family protein 1Chr20:46928669–46932256 (+)2.123e-11
Glyma.20G237600 hypothetical protein NA 1Chr20:46943062–46944735 (+)2.123e-11