Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18497

Metabolite ID
P18497
Deionized mass
512.1708 Da
Average m/z
513.1764
Average RT
12.7741
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.641e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.697e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)3.829e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.641e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.343e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.326e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)9.366e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.792e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.2e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)6.778e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)6.778e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)6.778e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)6.778e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)6.778e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)6.778e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)6.778e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.546e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)3.086e-11
Glyma.03G007900 hypothetical protein NA 1Chr03:764330–766878 (-)9.258e-11
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)2.625e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.914e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.399e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.478e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.478e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.941e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.458e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.458e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.458e-13
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)7.408e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)1.135e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)7.978e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.28e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.225e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.181e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.143e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.049e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.049e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)6.081e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.697e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.697e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.33e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.565e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)6.578e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)7.826e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.298e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.767e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.689e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.689e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.689e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.31e-11
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)5.039e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)6.255e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.899e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.038e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.33e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)7.707e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.92e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.92e-11
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)8.415e-14
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.869e-11