Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18485

Metabolite ID
P18485
Deionized mass
1106.4440 Da
Average m/z
1107.4491
Average RT
12.7725
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
77
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

77 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)4.48e-11
Glyma.20G071200 hypothetical protein NA 4Chr20:25316540–25366827 (+)1.943e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)9.962e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.924e-11
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 2Chr08:9169843–9172229 (-)4.272e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.487e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.691e-13
Glyma.20G070800 VAD1 AT1G02120:VAD1:GRAM domain family protein 2Chr20:25156336–25176331 (-)1.943e-11
Glyma.20G084900 hypothetical protein NA 2Chr20:31707347–31709780 (-)1.943e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)9.202e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.941e-13
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)3.941e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.944e-11
Glyma.04G096300 hypothetical protein NA 1Chr04:8635554–8654734 (+)6.212e-11
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)4.48e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)4.48e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)4.48e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.918e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)9.949e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.991e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.668e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.078e-17
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.792e-17
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.823e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.292e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.996e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.291e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.51e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.141e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.141e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.199e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.418e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.417e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.654e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.417e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.417e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.654e-11
Glyma.06G293300 hypothetical protein AT4G28280:LLG3:LORELEI-LIKE-GPI ANCHORED PROTEIN 3 1Chr06:48198132–48201464 (-)6.629e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)3.752e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.537e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)2.871e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)3.02e-12
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)6.485e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.199e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.223e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.927e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.198e-14
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)2.062e-16
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)4.114e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.487e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.546e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.546e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.545e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.008e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.905e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.905e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.446e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.849e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.02e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)8.904e-11
Glyma.18G050100 hypothetical protein NA 1Chr18:4323734–4329696 (+)9.723e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.227e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)3.282e-11
Glyma.20G070100 hypothetical protein NA 1Chr20:24897324–24898925 (-)1.943e-11
Glyma.20G071000 hypothetical protein NA 1Chr20:25298698–25300941 (+)1.943e-11
Glyma.20G074500 hypothetical protein AT2G38710:AT2G38710:AMMECR1 family 1Chr20:26796617–26809116 (-)1.943e-11
Glyma.20G074600 hypothetical protein NA 1Chr20:26803189–26805842 (+)1.943e-11
Glyma.20G076500 hypothetical protein AT1G04780:AT1G04780:Ankyrin repeat family protein 1Chr20:27700886–27708055 (+)1.943e-11
Glyma.20G083800 hypothetical protein NA 1Chr20:31482676–31483763 (-)1.943e-11
Glyma.20G083900 hypothetical protein NA 1Chr20:31503404–31505246 (-)1.943e-11
Glyma.20G084000 hypothetical protein AT4G30220:RUXF:small nuclear ribonucleoprotein F__AT2G14285:AT2G14285:Small nuclear ribonucleoprotein family protein 1Chr20:31536334–31538924 (+)1.943e-11
Glyma.20G084500 hypothetical protein AT2G33340:MAC3B:MOS4-associated complex 3B__AT1G04510:MAC3A:MOS4-associated complex 3A 1Chr20:31666190–31674959 (-)1.943e-11
Glyma.20G084700 hypothetical protein NA 1Chr20:31686813–31687483 (-)1.943e-11
Glyma.20G085000 hypothetical protein NA 1Chr20:31745486–31748473 (-)1.943e-11
Glyma.20G085300 hypothetical protein AT2G33360:AT2G33360:cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) 1Chr20:31823173–31827117 (+)1.943e-11
Glyma.20G085400 hypothetical protein NA 1Chr20:31828204–31832688 (+)1.943e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)7.546e-11