Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17609

Metabolite ID
P17609
Deionized mass
235.1563 Da
Average m/z
236.1631
Average RT
12.5785
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
118
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

118 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)3.404e-11
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)1.001e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)5.816e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.375e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)1.177e-15
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)7.241e-14
Glyma.18G201700 hypothetical protein NA 2Chr18:48175554–48180264 (+)5.308e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.208e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.039e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.586e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.649e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)9.571e-14
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)4.213e-13
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)7.793e-13
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)7.793e-13
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)7.793e-13
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)7.793e-13
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)7.793e-13
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)7.793e-13
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)7.793e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)5.816e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.602e-12
Glyma.03G039900 hypothetical protein NA 1Chr03:4988423–4991582 (-)2.739e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.232e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.927e-16
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)4.689e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)7.515e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.277e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.912e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.912e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.551e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.555e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.555e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.555e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)8.099e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.703e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.168e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.15e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)3.959e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)3.959e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)3.959e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.682e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.273e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.273e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.273e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.559e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.559e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.776e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.239e-12
Glyma.06G301000 hypothetical protein NA 1Chr06:49001317–49005605 (+)8.818e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.485e-11
Glyma.07G075800 hypothetical protein NA 1Chr07:6875198–6875843 (+)6.219e-11
Glyma.07G075900 hypothetical protein AT2G45770:CPFTSY:signal recognition particle receptor protein, chloroplast (FTSY) 1Chr07:6876183–6883727 (-)6.219e-11
Glyma.07G076000 hypothetical protein AT2G31890:RAP:RAP 1Chr07:6887412–6890944 (+)6.219e-11
Glyma.07G076200 hypothetical protein NA 1Chr07:6910458–6911241 (+)6.219e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.275e-12
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)1.292e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)7.191e-12
Glyma.08G336900 hypothetical protein AT1G55730:CAX5:cation exchanger 5 1Chr08:45376142–45387404 (-)5.021e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.912e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.997e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.481e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.683e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.071e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.352e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.352e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.352e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.352e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.206e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.433e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)4.797e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.783e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.783e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.643e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.643e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.709e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.767e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)1.602e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.674e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.674e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)3.424e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.08e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)6.555e-11
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)2.645e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)1.001e-11
Glyma.14G011900 hypothetical protein AT5G55960:AT5G55960:transmembrane protein C9orf5 protein 1Chr14:902341–905336 (-)4.312e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.397e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)8.81e-14
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.649e-16
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.026e-21
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.869e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.623e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.869e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.869e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.747e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.445e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.336e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)7.311e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.945e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.219e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)9.828e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.047e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.269e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.269e-11
Glyma.17G144400 hypothetical protein NA 1Chr17:11801158–11803913 (+)3.996e-11
Glyma.17G169100 hypothetical protein AT3G50210:AT3G50210:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein__AT3G49620:DIN11:2-oxogluta… 1Chr17:15650607–15655215 (-)9.041e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)4.903e-12
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)4.875e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)1.113e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.001e-15
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)2.452e-11
Glyma.18G107800 hypothetical protein AT1G06500:AT1G06500:uncharacterized protein 1Chr18:12208710–12212011 (-)1.73e-12
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 1Chr18:12220182–12260477 (+)1.73e-12
Glyma.18G108000 hypothetical protein NA 1Chr18:12221736–12225257 (-)1.73e-12
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)4.689e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.166e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.01e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)8.504e-11