Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17145

Metabolite ID
P17145
Deionized mass
179.0929 Da
Average m/z
180.1004
Average RT
12.4612
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
112
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

112 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.039e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.153e-14
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)1.865e-15
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)5.214e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)1.183e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)8.138e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)6.416e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.993e-17
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.608e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.153e-14
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)6.888e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)9.169e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.182e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.497e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.295e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.378e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.955e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.955e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.955e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.955e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.955e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.955e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.955e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)1.183e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.109e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.109e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)7.77e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.455e-15
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.097e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.73e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.73e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.017e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.486e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.486e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.486e-15
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)3.779e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)3.779e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.376e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.35e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.619e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.4e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.335e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.987e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.035e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.035e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)5.806e-11
Glyma.06G190600 hypothetical protein NA 1Chr06:16718710–16723775 (-)5.837e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.299e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.52e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.52e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)6.027e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.666e-11
Glyma.08G117700 hypothetical protein NA 1Chr08:9080318–9084658 (-)9.517e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.983e-13
Glyma.08G147300 hypothetical protein NA 1Chr08:11238871–11242682 (+)6.454e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)3.789e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)1.765e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)1.765e-11
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)1.14e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.85e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)4.666e-19
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.522e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.356e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.004e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.631e-14
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.731e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)4.357e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.1e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.796e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.796e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.796e-12
Glyma.11G221000 RCA11 AT2G39730:RCA:rubisco activase 1Chr11:31621224–31624882 (-)2.866e-11
Glyma.11G223200 hypothetical protein NA 1Chr11:31833899–31837181 (+)1.42e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)3.432e-11
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)5.938e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.328e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.328e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.789e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.789e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.789e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.048e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.408e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.442e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.153e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.587e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.153e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.153e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.536e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.07e-14
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.731e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.546e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)8.21e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.955e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.039e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)3.713e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.385e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.815e-14
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)4.517e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.611e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)8.278e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.631e-15
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)6.946e-12
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)4.405e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.446e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.446e-12
Glyma.17G169100 hypothetical protein AT3G50210:AT3G50210:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein__AT3G49620:DIN11:2-oxogluta… 1Chr17:15650607–15655215 (-)1.866e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)5.214e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)3.689e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.139e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.869e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.869e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)7.702e-11