Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P17025

Metabolite ID
P17025
Deionized mass
757.2112 Da
Average m/z
758.2192
Average RT
12.4336
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
90
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

90 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.624e-15
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)5.48e-11
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)8.975e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)4.399e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.545e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)9.176e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.137e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.386e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.725e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.029e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)6.161e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)6.161e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)6.161e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)6.161e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)6.161e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)6.161e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)6.161e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.671e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.007e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.748e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.643e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.643e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.643e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)3.306e-11
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)9.946e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)6.946e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.511e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.803e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.778e-25
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.026e-20
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.298e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.298e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)4.132e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)4.132e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)7.404e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)2.426e-12
Glyma.13G189700 hypothetical protein AT5G07050:UMAMIT9:nodulin MtN21 /EamA-like transporter family protein 1Chr13:30310606–30315849 (-)8.14e-13
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)1.379e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)8.975e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.517e-14
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.653e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.325e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.653e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.653e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)1.101e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)7.428e-15
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)1.229e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)2.631e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.318e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)5.107e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.624e-15
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.271e-13
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)9.572e-11
Glyma.16G112800 hypothetical protein AT1G30590:AT1G30590:RNA polymerase I specific transcription initiation factor RRN3 protein__AT2G34750:AT2G34750:RNA pol… 1Chr16:25033921–25041652 (+)5.48e-11
Glyma.16G112900 hypothetical protein AT5G65950:AT5G65950:trafficking protein particle complex subunit-like protein 1Chr16:25064625–25072914 (-)5.48e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)8.529e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)8.529e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)8.529e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)8.529e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.692e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.596e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.702e-13
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)4.528e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.213e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)6.58e-12
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)6.58e-12
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)6.58e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.735e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)6.623e-13
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)7.71e-11
Glyma.20G058300 hypothetical protein AT2G31340:emb1381:embryo defective 1381 1Chr20:17536634–17556845 (-)1.816e-11
Glyma.20G058500 hypothetical protein AT5G35690:AT5G35690:zinc metalloproteinase-like protein 1Chr20:17704024–17732890 (-)1.816e-11
Glyma.20G058600 hypothetical protein NA 1Chr20:17714996–17723526 (-)1.816e-11
Glyma.20G058900 hypothetical protein NA 1Chr20:17856607–17870302 (-)1.816e-11
Glyma.20G059000 hypothetical protein AT4G12650:AT4G12650:Endomembrane protein 70 protein family 1Chr20:17864634–17867799 (+)1.816e-11
Glyma.20G060000 hypothetical protein AT2G04360:AT2G04360:uncharacterized protein 1Chr20:18396137–18402016 (+)1.816e-11
Glyma.20G061600 hypothetical protein AT4G12680:AT4G12680:uncharacterized protein 1Chr20:19167408–19171993 (-)1.816e-11
Glyma.20G061900 hypothetical protein NA 1Chr20:19276438–19277943 (-)1.816e-11
Glyma.20G062200 hypothetical protein NA 1Chr20:19517781–19521218 (-)1.816e-11
Glyma.20G064100 hypothetical protein NA 1Chr20:21538873–21551968 (+)1.816e-11
Glyma.20G065200 hypothetical protein AT4G14965:MAPR4:membrane-associated progesterone binding protein 4 1Chr20:23032161–23039465 (+)1.816e-11
Glyma.20G065700 hypothetical protein NA 1Chr20:23270247–23273003 (+)1.816e-11
Glyma.20G066100 NRP-A AT5G42050:AT5G42050:DCD (Development and Cell Death) domain protein 1Chr20:23415656–23418864 (-)1.816e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)2.687e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)4.592e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)5.332e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.28e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)1.632e-11
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)9.413e-13
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)6.122e-11