Overview Annotation GWAS Evidence Associated genes

P16940

Metabolite ID
P16940
Deionized mass
355.1126 Da
Average m/z
356.1217
Average RT
12.4123
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
149
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

149 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.393e-12
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)7.624e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.146e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)8.933e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.338e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.38e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)9.897e-14
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)3.491e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)5.143e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.57e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.57e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.57e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.621e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.671e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.644e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.644e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.857e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.201e-14
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.887e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.576e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.146e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.529e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.63e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.563e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)5.475e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)7.6e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.972e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)7.537e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)7.771e-13
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)7.379e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.992e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.129e-15
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.786e-15
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)1.365e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.938e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.794e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.794e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.231e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.827e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.827e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.827e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.202e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)2.685e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.078e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.187e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.416e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)4.717e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.122e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.077e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.406e-19
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.478e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.478e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.478e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.527e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.225e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.225e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)4.134e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.683e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.256e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.683e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.683e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.256e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.819e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.496e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.974e-13
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)6.526e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.432e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)9.465e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)9.465e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)4.315e-12
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)9.799e-11
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)9.799e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)9.799e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)6.516e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.118e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.191e-13
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)1.457e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.154e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)6.017e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.318e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.57e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.57e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.57e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.57e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.57e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.409e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.8e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.8e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.8e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.8e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.995e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.985e-15
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.979e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.122e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.121e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.118e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.118e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.698e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.698e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.671e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.516e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.516e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.644e-15
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.933e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.025e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.857e-11
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)2.837e-11
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)2.837e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.91e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.91e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.317e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.84e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.317e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.317e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.642e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.672e-13
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.021e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.567e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.393e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.708e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.274e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.11e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.38e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.38e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.769e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.374e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.303e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)6.527e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.142e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)6.75e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.28e-16
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.004e-17
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.712e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.229e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)4.409e-12
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)2.807e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.735e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)4.553e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.771e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.95e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.95e-12
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)6.184e-11
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)1.323e-11
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)1.323e-11
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)1.323e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)9.754e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.789e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.341e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)6.999e-11