Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16385

Metabolite ID
P16385
Deionized mass
408.1926 Da
Average m/z
409.2002
Average RT
12.2598
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
122
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

122 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)9.166e-13
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)2.28e-13
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)3.317e-14
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.085e-13
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)3.266e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)6.37e-12
Glyma.04G086600 hypothetical protein NA 2Chr04:7374806–7380808 (+)6.562e-13
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr09:5571201–5579976 (-)3.046e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 2Chr12:34708678–34710549 (+)1.683e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.136e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.136e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.941e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.903e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.703e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)9.166e-13
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.791e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)6.185e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)3.266e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)2.297e-11
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)8.227e-13
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)3.694e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.411e-14
Glyma.02G265700 hypothetical protein NA 1Chr02:45059017–45060529 (-)4.7e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)5.704e-12
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)5.704e-12
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)5.704e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)9.379e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.665e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.32e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)4.618e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.661e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)4.422e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.108e-15
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.832e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.849e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.707e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.11e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.096e-16
Glyma.06G073700 hypothetical protein AT2G25660:emb2410:embryo defective 2410 1Chr06:5670056–5689370 (-)6.353e-11
Glyma.06G074700 hypothetical protein AT2G25730:AT2G25730:zinc finger FYVE domain protein 1Chr06:5758402–5786537 (-)6.353e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)8.311e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.599e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.599e-13
Glyma.06G150700 hypothetical protein AT1G49180:AT1G49180:protein kinase family protein 1Chr06:12289992–12292323 (+)7.367e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)3.099e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)4.164e-13
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 1Chr06:18712866–18716868 (+)2.007e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)9.24e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.436e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.888e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.085e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.085e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.68e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)6.17e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)6.17e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)1.771e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)6.625e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)6.625e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)3.034e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)3.034e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)6.625e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)2.169e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)2.169e-12
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)7.649e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.96e-14
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.49e-11
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)2.11e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)2.626e-14
Glyma.07G129900 hypothetical protein AT2G06925:PLA2-ALPHA:Phospholipase A2 family protein 1Chr07:15420011–15421954 (-)2.088e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.036e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)4.154e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)3.793e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.623e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.002e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.068e-16
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.072e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)4.32e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.019e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.112e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.112e-13
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)6.857e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.064e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.064e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.672e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.815e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.815e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.136e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)3.636e-13
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)3.636e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.364e-14
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)1.371e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.903e-14
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.702e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.849e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.169e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.478e-12
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)4.785e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.039e-15
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.039e-15
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.155e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.343e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)9.872e-11
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)5.574e-11
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)5.574e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)3.477e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.966e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.032e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.113e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.483e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.011e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.011e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.59e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)6.775e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)3.829e-12
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)5.419e-13
Glyma.18G197500 hypothetical protein NA 1Chr18:47377826–47380850 (+)5.509e-11
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)4.342e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)2.676e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)5.574e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.899e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.899e-17
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.619e-11