Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16046

Metabolite ID
P16046
Deionized mass
440.2105 Da
Average m/z
441.2181
Average RT
12.1605
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G029800 hypothetical protein NA 3Chr19:3724518–3729860 (-)8.362e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)5.878e-13
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.16e-11
Glyma.19G027000 hypothetical protein NA 2Chr19:3335896–3343744 (+)2.473e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.363e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.624e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.628e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.367e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.367e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.367e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.645e-17
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.645e-17
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.645e-17
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.043e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.043e-11
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)1.521e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.562e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.496e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.371e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)9.837e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.776e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.755e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.755e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.327e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.327e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.945e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.369e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.657e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.657e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.151e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.382e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.036e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.661e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.138e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.681e-14
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)3.941e-11
Glyma.19G026900 hypothetical protein NA 1Chr19:3331196–3333961 (-)2.473e-11
Glyma.19G029500 hypothetical protein NA 1Chr19:3669589–3673886 (-)8.363e-11
Glyma.19G029900 hypothetical protein NA 1Chr19:3729213–3729434 (+)8.362e-11
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)8.187e-13
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)8.187e-13
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)2.015e-13