Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P16025

Metabolite ID
P16025
Deionized mass
666.2388 Da
Average m/z
667.2454
Average RT
12.1549
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)5.718e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.624e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.107e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.107e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)1.232e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.674e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.079e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.422e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.803e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)8.559e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.922e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.155e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.592e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.275e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.577e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.276e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.86e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.779e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.624e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.624e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.624e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.624e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.424e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.7e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.638e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.534e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.534e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.534e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.534e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.596e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.311e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)4.029e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.186e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.186e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.261e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.261e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.811e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.786e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.786e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.107e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.394e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.753e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.282e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.282e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.124e-13
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.509e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.509e-11
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)1.084e-11
Glyma.14G212500 hypothetical protein AT3G02850:SKOR:STELAR K+ outward rectifier 1Chr14:47758067–47768578 (-)8.738e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)5.59e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.911e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.349e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.911e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.911e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)7.209e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.272e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.183e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.468e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.064e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.064e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)5.524e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.545e-12