Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15837

Metabolite ID
P15837
Deionized mass
468.7569 Da
Average m/z
469.7633
Average RT
12.1063
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
120
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

120 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.533e-12
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)1.025e-11
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)2.913e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.225e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.75e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.693e-18
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.354e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.088e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)2.73e-14
Glyma.01G039400 hypothetical protein AT1G10417:AT1G10417:RUN/FYVE domain protein 1Chr01:4270598–4275060 (+)5.773e-11
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)8.402e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)7.393e-12
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)7.393e-12
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)6.196e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)1.058e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)1.058e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)1.058e-11
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)1.962e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.265e-15
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)1.946e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)1.365e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.121e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.037e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)6.572e-11
Glyma.04G124600 hypothetical protein NA 1Chr04:16329983–16332898 (-)9.411e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)3.752e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.146e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.582e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.582e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.039e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.782e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.782e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.782e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.95e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.837e-18
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.56e-17
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.737e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.353e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.212e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.176e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.176e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)8.944e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)6.356e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.649e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.205e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.649e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.649e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.205e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)7.82e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.224e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.217e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.217e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.803e-18
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)2.335e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.596e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.853e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.401e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.077e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.073e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.073e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)4.309e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)9.74e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.942e-12
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)1.733e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.403e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.304e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.326e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.326e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.326e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.326e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.319e-15
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)3.528e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.18e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.18e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.166e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.166e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)3.528e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.16e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.16e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.177e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.629e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.629e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.841e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.129e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.036e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)1.103e-17
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)1.103e-17
Glyma.14G094500 hypothetical protein NA 1Chr14:8788109–8793948 (-)8.913e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.544e-22
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.354e-15
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.088e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.885e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.719e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.395e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.522e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.945e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)4.023e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)4.515e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.005e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.898e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.533e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.122e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.121e-14
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)1.047e-11
Glyma.18G027300 hypothetical protein NA 1Chr18:2049280–2053959 (-)7.29e-11
Glyma.18G057500 hypothetical protein AT2G30170:PBCP:Protein phosphatase 2C family protein 1Chr18:5080060–5083756 (-)5.428e-11
Glyma.18G057600 hypothetical protein AT1G07020:AT1G07020:uncharacterized protein 1Chr18:5084210–5084791 (+)5.428e-11
Glyma.18G057900 hypothetical protein NA 1Chr18:5092695–5097651 (-)5.428e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.93e-15
Glyma.18G213700 hypothetical protein NA 1Chr18:50068173–50075808 (-)8.632e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)1.157e-12
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)6.801e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.09e-12
Glyma.19G144200 hypothetical protein AT2G42280:FBH4:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:40545843–40548762 (+)5.403e-13
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)1.084e-11
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)7.217e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.626e-15
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.499e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)9.67e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.639e-13