Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P15647

Metabolite ID
P15647
Deionized mass
258.1525 Da
Average m/z
259.1604
Average RT
12.0558
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
131
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

131 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.048e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.474e-14
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)6.278e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.373e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.639e-16
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.293e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)4.872e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)7.316e-12
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)4.927e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)8.099e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.857e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.916e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)3.189e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.193e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.476e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.946e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)9.914e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.369e-16
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.353e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.474e-14
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)6.819e-13
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)9.015e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)7.686e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.434e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.56e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)2.058e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.491e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.778e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.813e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.659e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.381e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.993e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.392e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.005e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.838e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.764e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.791e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.791e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.282e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.004e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.282e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.282e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.004e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)3.502e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.483e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.857e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.857e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.857e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.857e-13
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.513e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.379e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.379e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.156e-12
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)8.137e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.94e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.447e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.269e-12
Glyma.09G167000 hypothetical protein NA 1Chr09:39103764–39109664 (-)7.78e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.852e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)4.283e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.772e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.772e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.772e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.772e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.932e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.742e-12
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)2.601e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.268e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.268e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.248e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.248e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.857e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.085e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.476e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.898e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)3.488e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.488e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.787e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.035e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.997e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.997e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)5.801e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.442e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.99e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.262e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.99e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.99e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.943e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)1.014e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)1.014e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)6.334e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)2.561e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.048e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)7.124e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.373e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.373e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.373e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.373e-12
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)8.243e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.371e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.379e-14
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.24e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.293e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.293e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.997e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.352e-17
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)6.097e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)6.097e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.946e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.946e-13
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)2.022e-13
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)3.995e-11
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)4.856e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)7.671e-12
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.169e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)8.651e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)8.887e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.353e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)1.679e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.321e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.321e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)1.2e-13
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)2.851e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.358e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)4.194e-11
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)6.952e-11
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)6.952e-11
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)6.952e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.567e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.452e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.479e-16