P13499
Metabolite ID
P13499
Deionized mass
133.0884 Da
Average m/z
134.0953
Average RT
11.4626
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
109
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
109 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.19G137700 | hypothetical protein | NA | 7 | Chr19:39904075–39916887 (+) | 9.064e-12 | |
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 8.257e-12 | |
| Glyma.19G037200 | hypothetical protein | AT5G15680:AT5G15680:ARM repeat superfamily protein | 4 | Chr19:5178930–5212367 (+) | 2.801e-13 | |
| Glyma.09G053800 | hypothetical protein | NA | 3 | Chr09:4737413–4755632 (-) | 2.14e-12 | |
| Glyma.14G213400 | hypothetical protein | NA | 3 | Chr14:47844823–47847028 (+) | 2.188e-13 | |
| Glyma.05G131200 | hypothetical protein | AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein | 2 | Chr05:32421116–32425198 (-) | 9.236e-13 | |
| Glyma.06G276100 | hypothetical protein | AT2G42700:AT2G42700:vesicle docking protein | 2 | Chr06:46706105–46714595 (-) | 4.108e-11 | |
| Glyma.09G052400 | hypothetical protein | AT1G31040:AT1G31040:PLATZ transcription factor family protein | 2 | Chr09:4583416–4589291 (-) | 3.966e-11 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 3.535e-15 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 3.535e-15 | |
| Glyma.14G067800 | hypothetical protein | AT3G12380:ARP5:actin-related protein 5 | 2 | Chr14:5675792–5680343 (+) | 3.595e-13 | |
| Glyma.19G011800 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 2 | Chr19:1134716–1143232 (+) | 5.184e-13 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 8.257e-12 | |
| Glyma.19G033700 | hypothetical protein | AT3G02320:AT3G02320:N2,N2-dimethylguanosine tRNA methyltransferase__AT5G15810:AT5G15810:tRNA (guanine(26)-N(2))-dimethy… | 2 | Chr19:4332261–4339570 (+) | 2.038e-11 | |
| Glyma.03G018600 | hypothetical protein | AT2G45695:AT2G45695:Ubiquitin related modifier 1 | 1 | Chr03:1859210–1862572 (-) | 4.449e-12 | |
| Glyma.03G018800 | hypothetical protein | AT2G45680:TCP9:TCP family transcription factor | 1 | Chr03:1875182–1876855 (+) | 6.586e-11 | |
| Glyma.03G019600 | hypothetical protein | AT2G45640:SAP18:SIN3 associated polypeptide P18 | 1 | Chr03:2007617–2009871 (+) | 4.493e-11 | |
| Glyma.03G039900 | hypothetical protein | NA | 1 | Chr03:4988423–4991582 (-) | 9.83e-15 | |
| Glyma.03G081100 | hypothetical protein | NA | 1 | Chr03:21841282–21846130 (+) | 3.152e-12 | |
| Glyma.03G085900 | hypothetical protein | AT3G07310:AT3G07310:phosphoserine aminotransferase, putative (DUF760) | 1 | Chr03:25280967–25285887 (-) | 1.369e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 1.579e-12 | |
| Glyma.03G209700 | hypothetical protein | NA | 1 | Chr03:41646792–41648527 (+) | 2.704e-11 | |
| Glyma.04G104400 | hypothetical protein | NA | 1 | Chr04:9885009–9889282 (+) | 1.319e-11 | |
| Glyma.04G107900 | hypothetical protein | AT3G53990:AT3G53990:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr04:11421366–11422972 (-) | 7.66e-13 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 3.796e-13 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 8.613e-13 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 1.846e-11 | |
| Glyma.06G019800 | hypothetical protein | NA | 1 | Chr06:1494230–1501925 (+) | 1.551e-11 | |
| Glyma.06G078400 | hypothetical protein | AT4G31290:AT4G31290:ChaC-like family protein | 1 | Chr06:6068728–6071360 (+) | 4.246e-12 | |
| Glyma.06G079400 | hypothetical protein | NA | 1 | Chr06:6105463–6107101 (+) | 1.433e-12 | |
| Glyma.06G084800 | hypothetical protein | NA | 1 | Chr06:6515571–6517480 (-) | 4.268e-13 | |
| Glyma.06G085000 | hypothetical protein | NA | 1 | Chr06:6524339–6529016 (-) | 4.268e-13 | |
| Glyma.06G085100 | hypothetical protein | NA | 1 | Chr06:6531956–6537295 (-) | 4.268e-13 | |
| Glyma.06G085200 | hypothetical protein | NA | 1 | Chr06:6540849–6545557 (+) | 3.293e-13 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 8.742e-12 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 8.742e-12 | |
| Glyma.06G126400 | hypothetical protein | AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein | 1 | Chr06:10356650–10362151 (-) | 6.807e-11 | |
| Glyma.06G126500 | hypothetical protein | AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr06:10367536–10373426 (-) | 2.908e-15 | |
| Glyma.06G126900 | hypothetical protein | AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) | 1 | Chr06:10403126–10408307 (-) | 1.358e-12 | |
| Glyma.06G134900 | hypothetical protein | AT4G27670:HSP21:heat shock protein 21 | 1 | Chr06:11083841–11088991 (+) | 1.181e-11 | |
| Glyma.06G136200 | hypothetical protein | AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein | 1 | Chr06:11160066–11162505 (-) | 4.576e-15 | |
| Glyma.07G068400 | hypothetical protein | AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein | 1 | Chr07:6173172–6180430 (-) | 4.397e-11 | |
| Glyma.07G068600 | hypothetical protein | NA | 1 | Chr07:6192764–6197166 (+) | 4.397e-11 | |
| Glyma.07G068700 | hypothetical protein | AT2G46060:AT2G46060:transmembrane protein-like protein | 1 | Chr07:6200187–6208590 (+) | 1.765e-11 | |
| Glyma.07G068800 | hypothetical protein | NA | 1 | Chr07:6211775–6221107 (-) | 1.765e-11 | |
| Glyma.07G069100 | hypothetical protein | NA | 1 | Chr07:6246145–6250192 (+) | 4.397e-11 | |
| Glyma.07G069400 | hypothetical protein | AT2G46020:BRM:transcription regulatory protein SNF2 | 1 | Chr07:6270176–6283087 (-) | 2.521e-13 | |
| Glyma.07G075000 | hypothetical protein | AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein | 1 | Chr07:6821674–6829551 (-) | 2.481e-11 | |
| Glyma.07G075300 | hypothetical protein | NA | 1 | Chr07:6843882–6845602 (-) | 2.481e-11 | |
| Glyma.07G080900 | hypothetical protein | NA | 1 | Chr07:7381339–7405785 (+) | 7.173e-12 | |
| Glyma.07G100400 | hypothetical protein | AT3G18050:AT3G18050:GPI-anchored protein | 1 | Chr07:9523110–9526319 (+) | 3.698e-11 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 5.44e-12 | |
| Glyma.08G227900 | hypothetical protein | NA | 1 | Chr08:18551920–18567339 (-) | 7.04e-12 | |
| Glyma.09G052700 | hypothetical protein | AT1G31120:KUP10:K+ uptake permease 10 | 1 | Chr09:4617652–4626364 (+) | 3.553e-12 | |
| Glyma.09G052900 | hypothetical protein | NA | 1 | Chr09:4652312–4653046 (+) | 4.924e-11 | |
| Glyma.09G054100 | hypothetical protein | NA | 1 | Chr09:4780506–4788669 (-) | 4.924e-11 | |
| Glyma.09G056300 | hypothetical protein | NA | 1 | Chr09:5059486–5068979 (+) | 1.578e-12 | |
| Glyma.09G056400 | hypothetical protein | NA | 1 | Chr09:5080364–5088515 (-) | 4.532e-14 | |
| Glyma.09G060200 | hypothetical protein | AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr09:5571201–5579976 (-) | 5.236e-12 | |
| Glyma.09G060300 | hypothetical protein | AT5G57140:PAP28:purple acid phosphatase 28 | 1 | Chr09:5609003–5612943 (+) | 2.062e-11 | |
| Glyma.09G060600 | hypothetical protein | AT3G28430:AT3G28430:CLEC16A-like protein | 1 | Chr09:5661672–5675338 (-) | 4.86e-12 | |
| Glyma.09G062900 | hypothetical protein | NA | 1 | Chr09:6004419–6011041 (+) | 2.062e-13 | |
| Glyma.10G265400 | hypothetical protein | AT2G01290:RPI2: | 1 | Chr10:48921268–48922795 (+) | 6.527e-12 | |
| Glyma.11G095100 | hypothetical protein | NA | 1 | Chr11:7212438–7214276 (-) | 5.904e-14 | |
| Glyma.11G238100 | hypothetical protein | AT4G39820:AT4G39820:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr11:33261569–33264662 (+) | 3.381e-11 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 3.728e-12 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 1 | Chr12:36406747–36413696 (+) | 1.073e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 4.948e-11 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 1 | Chr12:36473422–36498915 (+) | 4.948e-11 | |
| Glyma.12G205900 | hypothetical protein | NA | 1 | Chr12:36622011–36625824 (+) | 9.853e-12 | |
| Glyma.13G135100 | hypothetical protein | AT5G02750:SGR9:RING/U-box superfamily protein | 1 | Chr13:24744740–24746437 (+) | 2.642e-11 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 6.965e-15 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 6.965e-15 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 3.535e-15 | |
| Glyma.13G142200 | hypothetical protein | AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 | 1 | Chr13:25483702–25502265 (+) | 4.743e-11 | |
| Glyma.13G156000 | hypothetical protein | AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 | 1 | Chr13:27104338–27109785 (+) | 1.72e-13 | |
| Glyma.14G066800 | hypothetical protein | NA | 1 | Chr14:5511222–5513114 (+) | 7.809e-14 | |
| Glyma.14G068100 | hypothetical protein | AT3G12550:FDM3:XH/XS domain-containing protein | 1 | Chr14:5701618–5711043 (-) | 1.573e-11 | |
| Glyma.14G068500 | hypothetical protein | NA | 1 | Chr14:5741909–5745574 (-) | 1.599e-14 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 2.163e-15 | |
| Glyma.14G071600 | hypothetical protein | AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein | 1 | Chr14:6016839–6019954 (+) | 4.863e-11 | |
| Glyma.14G071700 | hypothetical protein | AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 | 1 | Chr14:6037810–6041899 (+) | 2.015e-11 | |
| Glyma.14G071800 | hypothetical protein | NA | 1 | Chr14:6040746–6041899 (-) | 2.015e-11 | |
| Glyma.14G072200 | Ipk1 | AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… | 1 | Chr14:6059598–6063755 (-) | 4.985e-11 | |
| Glyma.14G075900 | hypothetical protein | NA | 1 | Chr14:6362111–6364010 (-) | 6.227e-14 | |
| Glyma.14G077100 | hypothetical protein | AT5G42610:AT5G42610:calcium uniporter (DUF607) | 1 | Chr14:6486139–6488935 (+) | 8.394e-14 | |
| Glyma.14G077200 | hypothetical protein | AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein | 1 | Chr14:6498564–6506068 (+) | 8.395e-14 | |
| Glyma.14G077300 | hypothetical protein | AT1G75040:PR5:pathosis-related protein 5 | 1 | Chr14:6508609–6520744 (-) | 8.394e-14 | |
| Glyma.14G078300 | hypothetical protein | NA | 1 | Chr14:6622779–6631676 (+) | 9.174e-12 | |
| Glyma.14G078400 | hypothetical protein | NA | 1 | Chr14:6634738–6639304 (+) | 1.183e-11 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 1.621e-11 | |
| Glyma.16G115800 | hypothetical protein | NA | 1 | Chr16:25719040–25728740 (-) | 4.841e-12 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 5.716e-11 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 1 | Chr16:26324650–26336836 (+) | 8.569e-11 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 7.696e-11 | |
| Glyma.16G121000 | IQD20 | AT3G51380:IQD20:IQ-domain 20 | 1 | Chr16:26909514–26910355 (+) | 1.198e-12 | |
| Glyma.16G121400 | hypothetical protein | NA | 1 | Chr16:26989007–26992349 (+) | 6.234e-11 | |
| Glyma.18G274100 | hypothetical protein | AT5G38880:AUG5:HAUS augmin-like complex subunit | 1 | Chr18:55672621–55681964 (+) | 2.932e-11 | |
| Glyma.19G006900 | hypothetical protein | AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr19:686556–692466 (-) | 5.091e-15 | |
| Glyma.19G011700 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 1 | Chr19:1123637–1130946 (+) | 1.724e-13 | |
| Glyma.19G033800 | hypothetical protein | AT3G02230:RGP1:reversibly glycosylated polypeptide 1 | 1 | Chr19:4352324–4355794 (-) | 2.038e-11 | |
| Glyma.19G037400 | hypothetical protein | AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein | 1 | Chr19:5224298–5228610 (-) | 2.801e-13 | |
| Glyma.19G038000 | hypothetical protein | AT3G02350:GAUT9:galacturonosyltransferase 9 | 1 | Chr19:5321094–5324327 (+) | 2.801e-13 | |
| Glyma.19G038100 | hypothetical protein | NA | 1 | Chr19:5350324–5355097 (+) | 2.049e-11 | |
| Glyma.19G038300 | hypothetical protein | NA | 1 | Chr19:5381177–5383149 (+) | 2.801e-13 | |
| Glyma.19G038400 | hypothetical protein | AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein | 1 | Chr19:5386122–5388865 (+) | 2.801e-13 | |
| Glyma.19G040100 | hypothetical protein | AT3G02460:AT3G02460:Ypt/Rab-GAP domain of gyp1p superfamily protein | 1 | Chr19:5773912–5781906 (-) | 8.573e-12 | |
| Glyma.19G041000 | hypothetical protein | NA | 1 | Chr19:5964641–5965947 (-) | 8.573e-12 | |
| Glyma.20G223300 | hypothetical protein | AT1G09770:CDC5:cell division cycle 5 | 1 | Chr20:45791239–45803369 (-) | 6.984e-14 |