Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P13039

Metabolite ID
P13039
Deionized mass
764.1375 Da
Average m/z
765.1453
Average RT
11.3354
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.404e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.095e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 2Chr10:48805999–48811533 (-)6.035e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.059e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.059e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.531e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.721e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.414e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.154e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)3.892e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.269e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.618e-14
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)8.296e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.252e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.84e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.761e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.085e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.044e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.99e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.595e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.595e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.595e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.595e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.679e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.639e-12
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)8.329e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.08e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.166e-14
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.166e-14
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.166e-14
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.166e-14
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.613e-11
Glyma.11G171200 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18475119–18484515 (+)3.245e-11
Glyma.11G171500 hypothetical protein NA 1Chr11:18629660–18631015 (+)3.245e-11
Glyma.11G171800 hypothetical protein NA 1Chr11:18663180–18666591 (-)3.245e-11
Glyma.11G172200 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18702580–18708310 (+)3.245e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)6.905e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)8.233e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.77e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.77e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.811e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.811e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.059e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.531e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.254e-11
Glyma.16G039800 hypothetical protein NA 1Chr16:3730538–3733668 (-)5.602e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)1.107e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.794e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.184e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)9.246e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.099e-13
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)1.664e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.147e-13
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)2.534e-11
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)1.278e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)1.278e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.474e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)4.652e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.75e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.896e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.596e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.596e-13
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)4.315e-12
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)6.765e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.247e-11
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)4.955e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.049e-13
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)3.312e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.599e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)6.224e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.682e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.044e-12
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)3.804e-14