Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12676

Metabolite ID
P12676
Deionized mass
139.1158 Da
Average m/z
140.1235
Average RT
11.2021
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
97
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

97 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 4Chr07:9523110–9526319 (+)5.585e-14
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)9.788e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)5.541e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.007e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.292e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.762e-11
Glyma.18G226300 hypothetical protein NA 2Chr18:51471540–51498344 (+)9.797e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.952e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)4.821e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)4.093e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)3.025e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.962e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.107e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.718e-14
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)7.547e-12
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)8.711e-11
Glyma.03G171500 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 1Chr03:38601039–38606103 (+)6.437e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)8.644e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.439e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.257e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.134e-14
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)9.598e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.793e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.071e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.596e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.596e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.112e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.412e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.508e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.716e-12
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)3.091e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)5.666e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)5.666e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.462e-12
Glyma.07G223600 hypothetical protein NA 1Chr07:40077049–40082294 (+)9.892e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.589e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)5.381e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)5.381e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)3.212e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)3.212e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.012e-11
Glyma.09G066400 hypothetical protein AT4G29790:AT4G29790:serine/arginine repetitive matrix protein 1Chr09:6509441–6524102 (+)8.852e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.01e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)9.221e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)7.896e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.407e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.316e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.385e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.385e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.578e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.578e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.578e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.578e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.818e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.294e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.098e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.09e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.033e-16
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.701e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.245e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)8.438e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.438e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)6.805e-11
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)1.183e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)5.428e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.259e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.225e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.259e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.259e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.706e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.112e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.806e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)6.993e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.292e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.567e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.029e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.816e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.501e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.172e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)2.43e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)3.509e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.887e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.887e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.762e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.846e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.427e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)6.97e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.611e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.104e-14
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)8.094e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)8.426e-12
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)3.28e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.402e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)4.402e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)8.703e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.729e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.729e-12