Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12495

Metabolite ID
P12495
Deionized mass
280.1437 Da
Average m/z
281.1491
Average RT
11.1286
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)8.412e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)7.827e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.205e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.283e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.852e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.971e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.971e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.765e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.836e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)4.087e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.202e-11
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)2.162e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)2.035e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.698e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.384e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)5.787e-18
Glyma.03G003400 hypothetical protein AT3G56850:AREB3:ABA-responsive element binding protein 3 1Chr03:313242–317840 (+)3.357e-11
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)2.942e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)4.959e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)9.539e-12
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)2.739e-13
Glyma.05G229700 hypothetical protein NA 1Chr05:40773431–40776814 (+)1.178e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)7.012e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)4.77e-12
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)4.77e-12
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)4.77e-12
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)4.77e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.782e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.111e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.111e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.111e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)7.726e-13
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)3.927e-13
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)3.927e-13
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.774e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.042e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.042e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.042e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.042e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.268e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.336e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.336e-14
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)4.474e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.338e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.338e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.152e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.006e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.852e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.588e-12
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)1.32e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.748e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.748e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.971e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)7.292e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.765e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.087e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)7.108e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)8.401e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.55e-11