Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P12486

Metabolite ID
P12486
Deionized mass
251.1344 Da
Average m/z
252.1399
Average RT
11.1241
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.292e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.119e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)6.738e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.007e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)9.048e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.084e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.604e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)9.698e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.119e-13
Glyma.01G165400 hypothetical protein AT4G36000:AT4G36000:Pathosis-related thaumatin superfamily protein 1Chr01:50285851–50288150 (-)7.376e-11
Glyma.01G165600 hypothetical protein NA 1Chr01:50305165–50307365 (-)6.414e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.975e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)6.229e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.218e-12
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)1.735e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.824e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.875e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.718e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.918e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.279e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.279e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.279e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.603e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.603e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.665e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.091e-14
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)2.882e-11
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)2.826e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.515e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.515e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)9.071e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.988e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.988e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.988e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)7.903e-14
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)9.623e-12
Glyma.14G135400 hypothetical protein AT2G24570:WRKY17:WRKY DNA-binding protein 17 1Chr14:23729201–23732285 (-)4.565e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.084e-12
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)4.6e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)3.878e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.221e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.617e-15
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)5.921e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)5.332e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.182e-17
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)5.335e-14
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)1.474e-14
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.292e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.268e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.007e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.007e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.007e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.007e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)4.476e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.566e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.142e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.304e-13
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.253e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.926e-12
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)9.023e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)7.424e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.007e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.007e-12