Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P11838

Metabolite ID
P11838
Deionized mass
575.2154 Da
Average m/z
576.2222
Average RT
10.9025
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.663e-14
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)5.492e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)7.631e-14
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)3.143e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.996e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.289e-12
Glyma.16G137600 hypothetical protein NA 2Chr16:29468438–29472890 (-)8.885e-13
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)7.173e-15
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.663e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.484e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)9.933e-14
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)7.43e-14
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)9.454e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.902e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)4.317e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.024e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.006e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.006e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.786e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.39e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.39e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.39e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.923e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.675e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.674e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.674e-16
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.264e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.264e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)4.043e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)5.378e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)5.378e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.502e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.574e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.123e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.123e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.27e-12
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)4.871e-12
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)4.871e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.06e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)9.782e-15
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)5.136e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.875e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.845e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.227e-13
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)3.688e-11
Glyma.13G166300 hypothetical protein NA 1Chr13:28110251–28113628 (-)3.497e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)2.809e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.184e-11
Glyma.14G114100 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr14:13581722–13588412 (+)6.74e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.289e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)9.75e-12
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)9.33e-11
Glyma.16G137800 hypothetical protein NA 1Chr16:29480352–29487400 (-)4.255e-13
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)1.621e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.504e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)9.382e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.783e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.032e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.605e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.605e-12
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)2.962e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.101e-11