Overview Annotation GWAS Evidence Associated genes

P10909

Metabolite ID
P10909
Deionized mass
573.2300 Da
Average m/z
574.2360
Average RT
10.6039
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
159
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

159 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.436e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.064e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)1.158e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)9.987e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.508e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 3Chr16:36806718–36809299 (+)1.101e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)7.601e-13
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)7.04e-13
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)1.447e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.023e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.106e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)4.236e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.356e-18
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.153e-16
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.381e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.381e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.968e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)5.888e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.064e-13
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 2Chr19:38632803–38635633 (+)1.181e-12
Glyma.01G018000 hypothetical protein NA 1Chr01:1736217–1737749 (-)1.592e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.614e-11
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)3.234e-11
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)3.831e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.672e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.354e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.512e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.789e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.379e-16
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.279e-12
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)3.464e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.955e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.867e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)6.225e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.357e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.945e-14
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)9.725e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.463e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.132e-12
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)5.107e-12
Glyma.06G086000 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr06:6631342–6639302 (+)4.347e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.689e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.689e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.689e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.926e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.926e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)3.247e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)3.247e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)3.247e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)3.247e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)3.247e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)3.247e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)3.247e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)3.247e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)3.247e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)3.247e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)3.985e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)3.985e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)3.985e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.069e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.285e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.069e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.069e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.285e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.904e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.1e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.1e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.215e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.026e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.106e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.106e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.106e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.106e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)2.662e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)5.308e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.959e-14
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.959e-14
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.468e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)9.161e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.759e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.546e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.833e-11
Glyma.09G167000 hypothetical protein NA 1Chr09:39103764–39109664 (-)2.382e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.937e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.01e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.74e-12
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)3.807e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)3.559e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.192e-18
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.192e-18
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.362e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.362e-14
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)6.615e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.678e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.678e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.728e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.943e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.092e-17
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.133e-12
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)3.082e-14
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)2.804e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.392e-14
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.987e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.632e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.362e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.362e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.381e-13
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)8.174e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.009e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.56e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.093e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.556e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.616e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.968e-13
Glyma.15G149900 hypothetical protein NA 1Chr15:12376028–12378637 (+)2.936e-11
Glyma.15G150000 hypothetical protein AT4G15930:AT4G15930:Dynein light chain type 1 family protein 1Chr15:12379048–12385520 (+)2.936e-11
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)1.139e-12
Glyma.15G150400 hypothetical protein AT3G06840:AT3G06840:uncharacterized protein 1Chr15:12436393–12437800 (-)1.511e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)7.185e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)4.785e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)4.785e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)3.004e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)3.154e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)3.451e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.888e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.508e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.508e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.508e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.508e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.016e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.467e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.553e-13
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)6.679e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)7.601e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.507e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.507e-14
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.911e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.911e-12
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)5.069e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)8.119e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.828e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.828e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)6.96e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.251e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.251e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)3.038e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)1.413e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.51e-13
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)6.127e-11
Glyma.19G193500 hypothetical protein NA 1Chr19:45118043–45121712 (-)2.052e-11
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)3.366e-13
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)3.366e-13
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)3.366e-13
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)2.88e-11
Glyma.19G216500 hypothetical protein AT3G62390:TBL6:TRICHOME BIREFRINGENCE-LIKE 6 1Chr19:46951591–46954520 (+)7.727e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.393e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.139e-14
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.641e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.57e-18