Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10870

Metabolite ID
P10870
Deionized mass
802.2147 Da
Average m/z
803.2205
Average RT
10.5896
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
127
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

127 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.741e-17
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)4.293e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.793e-14
Glyma.16G117500 hypothetical protein NA 3Chr16:26238240–26248326 (+)6.406e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)6.253e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)9.61e-15
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 3Chr19:5178930–5212367 (+)6.27e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.721e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)5.361e-14
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)5.36e-14
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)5.36e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)6.134e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.398e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.678e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.294e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.933e-12
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)3.741e-17
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)1.841e-12
Glyma.16G115500 hypothetical protein NA 2Chr16:25622503–25630816 (+)4.293e-14
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 2Chr16:26057276–26069534 (+)4.773e-16
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.184e-18
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.793e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.183e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.103e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.422e-13
Glyma.03G007100 hypothetical protein AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… 1Chr03:647777–651152 (-)7.299e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)2.113e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.369e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.578e-13
Glyma.04G023600 hypothetical protein AT4G24200:AT4G24200:Transcription elongation factor (TFIIS) family protein 1Chr04:1864445–1871054 (+)1.112e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.026e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.922e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.922e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.255e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.33e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.33e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.33e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.344e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.774e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.44e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.746e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.798e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.436e-18
Glyma.06G013000 hypothetical protein AT4G34460:AGB1:GTP binding protein beta 1 1Chr06:966714–973712 (+)5.538e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.002e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.002e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.002e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.042e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.042e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.012e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.041e-13
Glyma.06G134300 hypothetical protein AT5G53620:AT5G53620:RNA polymerase II degradation factor 1Chr06:11035872–11043485 (+)4.136e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.195e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.11e-14
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.195e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.195e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.11e-14
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.573e-15
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)5.211e-15
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)7.154e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)7.154e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.934e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.015e-14
Glyma.07G134900 hypothetical protein NA 1Chr07:16006946–16011150 (+)9.061e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)9.502e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.316e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.167e-15
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)5.361e-14
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)5.361e-14
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)5.36e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.454e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)5.361e-14
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)5.361e-14
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)8.56e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.707e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.83e-15
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.83e-15
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)3.947e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.83e-15
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.83e-15
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.331e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.428e-13
Glyma.11G020900 hypothetical protein NA 1Chr11:1482644–1490708 (+)2.061e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)7.813e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.804e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.044e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.678e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.537e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.634e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.294e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.691e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.691e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.691e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.933e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.065e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.258e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.065e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.065e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.408e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)6.244e-12
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)1.841e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.389e-16
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.293e-14
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.293e-14
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.293e-14
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.558e-13
Glyma.16G117000 hypothetical protein NA 1Chr16:26140411–26140830 (+)1.522e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.559e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)9.61e-15
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)9.61e-15
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.767e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.928e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)6.486e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.353e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.353e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)4.148e-13
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)2.153e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)2.153e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)7.149e-15
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)9.689e-11
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)6.27e-11
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)6.27e-11
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)6.27e-11
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)6.27e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.565e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.397e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)7.122e-11