Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10493

Metabolite ID
P10493
Deionized mass
370.0498 Da
Average m/z
371.0587
Average RT
10.4585
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
128
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

128 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.451e-12
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)5.12e-12
Glyma.14G149300 hypothetical protein NA 3Chr14:32235308–32258014 (+)1.107e-19
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.143e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)5.759e-14
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)3.007e-13
Glyma.13G224800 hypothetical protein NA 2Chr13:33748627–33756494 (-)5.264e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 2Chr16:5656328–5663040 (-)3.586e-17
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)6.242e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)9.348e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)7.291e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.451e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.58e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.959e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.631e-11
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)4.413e-11
Glyma.02G277200 hypothetical protein AT5G12290:DGS1:dgd1 suppressor 1 1Chr02:45999642–46007578 (+)8.032e-11
Glyma.02G277400 hypothetical protein AT2G26770:SCAB1:plectin-like protein 1Chr02:46014763–46020988 (-)8.032e-11
Glyma.02G277500 hypothetical protein AT1G54140:TAFII21:TATA binding protein associated factor 21kDa subunit 1Chr02:46027755–46029924 (+)8.032e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.956e-12
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)9.977e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.147e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.688e-16
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.355e-14
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.916e-12
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.151e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.064e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.697e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.806e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.241e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.206e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.154e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.632e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.632e-13
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)2.34e-12
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)2.34e-12
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)7.054e-11
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 1Chr06:18712866–18716868 (+)2.423e-12
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)6.203e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.853e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.085e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.853e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.853e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.085e-13
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)6.413e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.713e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)3.802e-11
Glyma.06G317900 hypothetical protein AT5G51400:AT5G51400:PLAC8 family protein 1Chr06:50645095–50649256 (+)3.854e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.834e-13
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)8.814e-12
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.194e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.276e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.878e-12
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)3.014e-13
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)3.014e-13
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)6.64e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.495e-23
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.408e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.039e-13
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.809e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.762e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.705e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.482e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.752e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.752e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)2.68e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.752e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.752e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)3.311e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)3.31e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)3.31e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.527e-12
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)1.775e-12
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)8.08e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)8.32e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.429e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)1.478e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.593e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.595e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.561e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.561e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.844e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)5.264e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.221e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.518e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.844e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.107e-19
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)2.157e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.533e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.601e-13
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)4.457e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)2.405e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)2.405e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)1.417e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.42e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.42e-13
Glyma.16G056400 hypothetical protein NA 1Chr16:5528931–5534927 (-)5.478e-13
Glyma.16G056900 hypothetical protein AT3G27110:AT3G27110:Peptidase family M48 family protein 1Chr16:5567105–5572944 (+)1.212e-12
Glyma.16G057400 hypothetical protein NA 1Chr16:5618869–5630701 (+)2.707e-11
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)3.127e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.285e-17
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)9.626e-12
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)1.588e-14
Glyma.16G058400 hypothetical protein AT3G04130:AT3G04130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:5722161–5724942 (+)8.931e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.143e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.143e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.458e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)6.889e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.51e-11
Glyma.17G007700 hypothetical protein NA 1Chr17:653891–655878 (+)2.028e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)2.631e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)6.242e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)7.44e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)6.242e-13
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)5.325e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.348e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)5.599e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.994e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.994e-15
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.883e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)6.033e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.176e-12
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)1.977e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)3.048e-13
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)6.33e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)6.373e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)9.494e-13