Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10309

Metabolite ID
P10309
Deionized mass
126.0310 Da
Average m/z
127.0379
Average RT
10.4070
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.779e-14
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)4.824e-12
Glyma.08G149500 hypothetical protein NA 2Chr08:11460264–11465243 (-)2.539e-12
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 2Chr12:35879106–35881779 (+)7.994e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.321e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)4.824e-12
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)1.399e-13
Glyma.03G046200 hypothetical protein NA 1Chr03:5895672–5899267 (+)3.383e-12
Glyma.03G047100 hypothetical protein AT3G51740:IMK2:inflorescence meristem receptor-like kinase 2 1Chr03:5986288–5990191 (+)2.051e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.458e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.836e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.058e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.058e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.625e-12
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)1.646e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)3.158e-11
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)4.742e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.163e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.163e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.163e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.163e-14
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)9.293e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.355e-12
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)9.293e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.288e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.288e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.288e-11
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)2.364e-12
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 1Chr11:15941545–15948932 (+)2.364e-12
Glyma.11G166200 hypothetical protein NA 1Chr11:15951003–15963149 (-)2.364e-12
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)2.364e-12
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)2.364e-12
Glyma.11G167800 hypothetical protein NA 1Chr11:16649420–16666371 (+)2.364e-12
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)2.364e-12
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)2.364e-12
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)2.364e-12
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)2.364e-12
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)2.364e-12
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)2.364e-12
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18345392–18359356 (-)2.364e-12
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)7.994e-12
Glyma.12G197500 hypothetical protein NA 1Chr12:35869162–35874097 (+)7.994e-12
Glyma.12G197800 hypothetical protein NA 1Chr12:35892655–35896825 (-)7.994e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.445e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.112e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.445e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.445e-12
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)3.014e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.023e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.779e-14
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)5.556e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.572e-11
Glyma.17G169100 hypothetical protein AT3G50210:AT3G50210:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein__AT3G49620:DIN11:2-oxogluta… 1Chr17:15650607–15655215 (-)6.274e-12
Glyma.19G022500 hypothetical protein AT5G15230:GASA4:GAST1 protein homolog 4 1Chr19:2574642–2577346 (+)7.994e-12