Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09888

Metabolite ID
P09888
Deionized mass
441.1630 Da
Average m/z
442.1685
Average RT
10.2924
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
89
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

89 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)5.564e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.25e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.864e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.864e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.864e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.207e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.039e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.305e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.305e-16
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.829e-14
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.313e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.504e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.848e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.848e-13
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.375e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.398e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)1.442e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.203e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.254e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)6.604e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.441e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.572e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.772e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.772e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.74e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.13e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.13e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.13e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.17e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.436e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.569e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.783e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.251e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.251e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.546e-11
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)3.404e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)2.568e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.196e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.106e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.11e-13
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.181e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.014e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.25e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.25e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.25e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.134e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)3.632e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.32e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.692e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.753e-14
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.864e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.864e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.864e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.864e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.864e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.13e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.636e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.244e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.156e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.076e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.076e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.957e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.957e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.789e-12
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)2.902e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.6e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.6e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.039e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.109e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.109e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.305e-16
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.921e-11
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)9.79e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)9.79e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)9.79e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)9.393e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.175e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.155e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.527e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.313e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.352e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.266e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.045e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)9.366e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.072e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.071e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.158e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.158e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.464e-11