Overview Annotation GWAS Evidence Associated genes

P09407

Metabolite ID
P09407
Deionized mass
641.1573 Da
Average m/z
642.1634
Average RT
10.1316
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
158
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

158 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.353e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.429e-14
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)2.617e-11
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)1.757e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.256e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)5.896e-16
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.41e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 3Chr16:34364037–34367765 (-)3.82e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)5.388e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)8.225e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.225e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)4.886e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)4.886e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)4.886e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.971e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.647e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.666e-13
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)7.969e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.998e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.545e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.545e-14
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)5.975e-15
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)3.535e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 2Chr18:48258271–48266554 (-)2.781e-14
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 2Chr19:472201–476152 (-)1.003e-16
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.429e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.392e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)9.885e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)2.775e-11
Glyma.02G109200 hypothetical protein AT1G14180:AT1G14180:RING/U-box superfamily protein 1Chr02:10483830–10487258 (-)9.886e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)6.342e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)6.307e-11
Glyma.03G007100 hypothetical protein AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… 1Chr03:647777–651152 (-)6.402e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.709e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.725e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.54e-15
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.943e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.336e-18
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.237e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.841e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.841e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.209e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.287e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.287e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.287e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.729e-14
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.05e-11
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)9.197e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.582e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.13e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.529e-18
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.315e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.375e-17
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.375e-17
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.099e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.416e-14
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)5.111e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.639e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.639e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)4.774e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)1.67e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.602e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.817e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.702e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.225e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.225e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.225e-12
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)2.984e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.432e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)2.617e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)2.617e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.297e-13
Glyma.09G187600 hypothetical protein AT5G19460:NUDT20:nudix hydrolase homolog 20 1Chr09:41213588–41217191 (+)5.408e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.735e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)4.886e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)4.886e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)4.886e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)3.625e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)4.886e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)4.886e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.673e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.273e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.273e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.273e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.273e-11
Glyma.10G261100 hypothetical protein NA 1Chr10:48628245–48635184 (+)3.673e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.141e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.141e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.141e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)3.192e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.981e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.981e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)7.692e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)7.415e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.112e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.228e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.666e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.229e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.041e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.489e-11
Glyma.13G052100 hypothetical protein NA 1Chr13:14902730–14924713 (-)6.057e-12
Glyma.13G052800 hypothetical protein NA 1Chr13:15005141–15009623 (+)1.525e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)5.05e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.998e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.543e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.544e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.545e-14
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)3.359e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)1.757e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.611e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.611e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.219e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.938e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.219e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.219e-15
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)5.895e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)9.326e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.353e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.545e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.256e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.256e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.256e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.256e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.486e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.252e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)4.689e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.41e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.41e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.304e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.266e-13
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.061e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.429e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.758e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)5.962e-14
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.853e-15
Glyma.16G141500 bZIP117 AT4G36730:GBF1:G-box binding factor 1 1Chr16:29960697–29967081 (-)2.161e-12
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)4.926e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.059e-16
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.657e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.545e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.545e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.155e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.155e-14
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)8.197e-13
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)8.196e-13
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)1.759e-11
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)1.764e-11
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)1.764e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.663e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.663e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.863e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.204e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)4.866e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.255e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.323e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)6.951e-11
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)1.325e-11
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 1Chr20:45428471–45432099 (+)9.867e-11