Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P08976

Metabolite ID
P08976
Deionized mass
301.1939 Da
Average m/z
302.2024
Average RT
9.9760
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.023e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.803e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.954e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.225e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 2Chr16:36943073–36948828 (+)7.7e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)1.057e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.023e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)6.977e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.862e-12
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)8.096e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.938e-11
Glyma.03G081100 hypothetical protein NA 1Chr03:21841282–21846130 (+)3.121e-11
Glyma.03G085900 hypothetical protein AT3G07310:AT3G07310:phosphoserine aminotransferase, putative (DUF760) 1Chr03:25280967–25285887 (-)5.142e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.026e-11
Glyma.04G083000 hypothetical protein AT4G32780:AT4G32780:phosphoinositide binding protein 1Chr04:7002219–7006087 (+)4.003e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.269e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.485e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.864e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.197e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.792e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.253e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.253e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.253e-12
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)7.117e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.383e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.383e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.044e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.74e-13
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)3.682e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)9.686e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.954e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.954e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.954e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.954e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.736e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.119e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.859e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.072e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.719e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.286e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.013e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.03e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.03e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.01e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.01e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.202e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.597e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.597e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.596e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.383e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.061e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.098e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.352e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.469e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.437e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.866e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.047e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.803e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)9.844e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)7.676e-12
Glyma.19G026100 hypothetical protein NA 1Chr19:3271594–3272980 (-)9.603e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.796e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.06e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.316e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.342e-13