Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07903

Metabolite ID
P07903
Deionized mass
319.0848 Da
Average m/z
320.0900
Average RT
9.6168
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
135
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

135 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)8.765e-12
Glyma.17G217900 hypothetical protein NA 4Chr17:36771760–36778616 (-)3.707e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)8.536e-19
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.115e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)2.396e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 3Chr17:36319785–36329259 (-)1.621e-15
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)7.398e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)5.56e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.977e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.066e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.572e-12
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)1.216e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)4.295e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.621e-15
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)7.788e-14
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.607e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.377e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.001e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.37e-13
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)1.156e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)1.464e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.632e-12
Glyma.03G250400 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr03:44616824–44621636 (-)1.807e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)9.253e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)8.986e-14
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.218e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.068e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.17e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.72e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.72e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.812e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.098e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.098e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.098e-14
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.119e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)9.058e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)6.742e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.959e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.265e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.604e-14
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)5.624e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)5.624e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)5.624e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.141e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.807e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.807e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.807e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.123e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.123e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.944e-11
Glyma.06G301000 hypothetical protein NA 1Chr06:49001317–49005605 (+)9.726e-12
Glyma.06G301100 hypothetical protein AT2G16030:AT2G16030:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr06:49013527–49014231 (+)3.517e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.116e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.115e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.086e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)9.405e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)3.394e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.661e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.149e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)3.616e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)5.452e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.853e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.397e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.586e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.464e-15
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.545e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.545e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.545e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.545e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.43e-15
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.596e-16
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)2.1e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.18e-14
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)1.557e-14
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)1.961e-12
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)6.731e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)8.242e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.77e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.77e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.949e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.949e-16
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)3.717e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.463e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.952e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.952e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.11e-11
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)1.268e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.855e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.695e-21
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.091e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.066e-12
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)9.835e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.572e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.864e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.962e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.864e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.864e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.333e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.162e-18
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.732e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)8.765e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.503e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.052e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.591e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.985e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.448e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.969e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.269e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)5.306e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.363e-16
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)4.987e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.413e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.598e-13
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)2.26e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)6.496e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)6.496e-11
Glyma.17G212100 hypothetical protein NA 1Chr17:35010757–35014587 (+)4.721e-11
Glyma.17G212200 hypothetical protein NA 1Chr17:35064075–35065120 (-)9.439e-13
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.698e-12
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)6.853e-14
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)1.374e-14
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)8.413e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)1.337e-15
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)9.665e-19
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)7.398e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)7.606e-11
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)2.749e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)8.801e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.151e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.981e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.981e-12
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)3.355e-12
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)1.069e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)9.443e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.44e-11