Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07888

Metabolite ID
P07888
Deionized mass
234.1009 Da
Average m/z
235.1072
Average RT
9.6089
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
120
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

120 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)6.421e-12
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)4.59e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.431e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)5.125e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.443e-11
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)1.254e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.971e-17
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.956e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.644e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)5.407e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.763e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.576e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.673e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.673e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.455e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)7.337e-17
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)7.567e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.431e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.191e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)3.143e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.359e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.359e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)7.708e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.071e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.406e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)6.52e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.456e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.55e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.55e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.55e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.395e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)1.599e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.546e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.27e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.01e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.485e-16
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.485e-16
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.484e-16
Glyma.06G134900 hypothetical protein AT4G27670:HSP21:heat shock protein 21 1Chr06:11083841–11088991 (+)6.51e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)1.445e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.735e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.316e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.454e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.644e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.644e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.644e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.644e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.4e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)2.897e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)2.897e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.98e-15
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)5.078e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.592e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.535e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.274e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.679e-12
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)6.851e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)9.467e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.295e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.028e-16
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.028e-16
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.915e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.915e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.331e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.576e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.7e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.443e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.606e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.041e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.041e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.673e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.839e-11
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)7.401e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)1.254e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.727e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)9.332e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.455e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.883e-12
Glyma.15G229600 hypothetical protein AT5G27110:AT5G27110:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr15:43046109–43063832 (+)6.742e-11
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)1.658e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)1.772e-14
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)1.772e-14
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)3.526e-14
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)6.421e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)5.685e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)4.84e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)6.023e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.59e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.59e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.59e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.59e-12
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)5.273e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.043e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.775e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.956e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.956e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.128e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.132e-18
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.692e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)4.458e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.548e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)6.151e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.292e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.679e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.95e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.95e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.248e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.371e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.044e-11
Glyma.19G006200 hypothetical protein NA 1Chr19:590763–595425 (+)9.733e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)1.388e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.986e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.986e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)3.814e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.926e-13
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)1.196e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)4.393e-13
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)3.878e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.282e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.219e-11