Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07405

Metabolite ID
P07405
Deionized mass
470.9858 Da
Average m/z
471.9906
Average RT
9.3997
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.602e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.717e-12
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)1.682e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.725e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.725e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.114e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)5.36e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.624e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.453e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.453e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.519e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.632e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.676e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.8e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.622e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.186e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.499e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.883e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.369e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.369e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.02e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.011e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.308e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.395e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.943e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.007e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)9.487e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)1.076e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)4.119e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.68e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.104e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.243e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.085e-13
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)8.152e-13
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)9.187e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)9.187e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.758e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.758e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.758e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.758e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.746e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.993e-13
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)3.033e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.104e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.104e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.086e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.086e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)5.796e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.725e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.725e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.867e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.303e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.251e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.932e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.337e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.587e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.086e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)5.36e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)8.998e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.997e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.26e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.26e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.292e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.538e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.691e-12