Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06935

Metabolite ID
P06935
Deionized mass
362.1342 Da
Average m/z
363.1421
Average RT
9.2243
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
64
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

64 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)5.554e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)9.369e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.429e-11
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.103e-17
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.334e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.552e-13
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.282e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.282e-12
Glyma.01G170700 hypothetical protein NA 1Chr01:50793927–50800725 (-)2.817e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)5.958e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.723e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)9.049e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.192e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)6.674e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.41e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.41e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.058e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.242e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.242e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.242e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.202e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)4.17e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.986e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.986e-11
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)9.699e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.821e-11
Glyma.09G052100 hypothetical protein AT3G22230:AT3G22230:Ribosomal L27e protein family 1Chr09:4536612–4538089 (+)7.23e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)8.556e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)1.124e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)8.556e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)3.115e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.837e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.441e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.308e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.717e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.717e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.489e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.489e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.489e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.489e-11
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)3.324e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.32e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)6.524e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)4.836e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.429e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)6.174e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.375e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.985e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.865e-12
Glyma.15G140500 hypothetical protein NA 1Chr15:11496139–11502209 (-)1.015e-14
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)1.971e-15
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.233e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.018e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.612e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.36e-12
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)9.261e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)3.478e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)3.478e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.631e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.207e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.207e-12
Glyma.20G236700 hypothetical protein AT3G05545:AT3G05545:RING/U-box superfamily protein 1Chr20:46886326–46894385 (+)8.891e-11
Glyma.20G237300 hypothetical protein AT5G27830:AT5G27830:folate receptor family protein 1Chr20:46928669–46932256 (+)4.459e-11
Glyma.20G237600 hypothetical protein NA 1Chr20:46943062–46944735 (+)4.459e-11