Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06857

Metabolite ID
P06857
Deionized mass
397.1422 Da
Average m/z
398.1494
Average RT
9.2015
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
107
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

107 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.752e-15
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)4.037e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)2.046e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.491e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.811e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.454e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 2Chr01:3821377–3825854 (-)4.037e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.58e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.212e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.293e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.293e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.03e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.052e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.752e-15
Glyma.01G034800 hypothetical protein NA 1Chr01:3605528–3607302 (-)7.161e-11
Glyma.01G036300 hypothetical protein NA 1Chr01:3813757–3814433 (+)7.654e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.89e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.526e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.836e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)5.035e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)2.439e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.98e-13
Glyma.03G085900 hypothetical protein AT3G07310:AT3G07310:phosphoserine aminotransferase, putative (DUF760) 1Chr03:25280967–25285887 (-)5.028e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)8.469e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.418e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.413e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.089e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.673e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.366e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.366e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.553e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.612e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.612e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.612e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.148e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.632e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.144e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.498e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.861e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.438e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.438e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.438e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.44e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.44e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.075e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.962e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.075e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.075e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.962e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.58e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.58e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.58e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.58e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.427e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)1.302e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)1.302e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)8.334e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.627e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.187e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.954e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.146e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.146e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.146e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.146e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.469e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.11e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.231e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.231e-15
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.916e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.916e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.641e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.344e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.373e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.373e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.769e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.491e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.293e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.293e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.235e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.03e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.944e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.641e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.944e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.944e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)3.183e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)3.183e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)4.216e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.811e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.811e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.811e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.811e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.197e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.972e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.026e-14
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.4e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.4e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)7.683e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.454e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)2.433e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)8.235e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.951e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.612e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.793e-14
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)5.812e-12
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)5.618e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.974e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.71e-13