Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06607

Metabolite ID
P06607
Deionized mass
116.0471 Da
Average m/z
117.0543
Average RT
9.1103
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
92
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

92 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.942e-12
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)3.5e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.557e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.211e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.531e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.146e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.631e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.56e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)9.541e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.798e-15
Glyma.13G224800 hypothetical protein NA 2Chr13:33748627–33756494 (-)3.305e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.33e-13
Glyma.16G055700 hypothetical protein AT3G56320:AT3G56320:PAP/OAS1 substrate-binding domain superfamily 2Chr16:5450641–5458545 (-)4.3e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.557e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.327e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.526e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.048e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.048e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.796e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.479e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.479e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.479e-13
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)9.341e-12
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)7.785e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.121e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.899e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.994e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.805e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.84e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.84e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.84e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.785e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.785e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.438e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)8.555e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.56e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.56e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.56e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.56e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.148e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.695e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.695e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.695e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.695e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.875e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.876e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.441e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.441e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.345e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.345e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.793e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.163e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.798e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.665e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.477e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.329e-11
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)3.305e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)2.269e-12
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)2.269e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.33e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.479e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.103e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.479e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.479e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)9.905e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.942e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.426e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)5.714e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)5.757e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.211e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.211e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.211e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.211e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.929e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.514e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.146e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.146e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.502e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.475e-14
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)1.037e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.982e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.683e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)6.238e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.631e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.037e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.037e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.258e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.258e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.197e-15
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)6.287e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.46e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)8.346e-12