Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06579

Metabolite ID
P06579
Deionized mass
418.1920 Da
Average m/z
419.1981
Average RT
9.0994
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
131
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

131 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 4Chr07:9523110–9526319 (+)1.574e-14
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.102e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.328e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)8.849e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.877e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.849e-12
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 2Chr14:47664851–47670630 (+)6.595e-12
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)1.102e-12
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)8.287e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)9.951e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.328e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.085e-17
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.938e-16
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 2Chr20:34467936–34475476 (-)2.574e-12
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)2.941e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)6.409e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)9.697e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)6.297e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)8.09e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.043e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.114e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)7.719e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.511e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)8.206e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.303e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.072e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.072e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.672e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.47e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.47e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.47e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.188e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.871e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.874e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.403e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.149e-21
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.863e-18
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.376e-14
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)8.858e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)6.801e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.371e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.342e-13
Glyma.07G035100 hypothetical protein NA 1Chr07:2810396–2815857 (+)7.134e-12
Glyma.07G035600 hypothetical protein AT1G67120:AT1G67120:midasin-like protein 1Chr07:2836189–2887535 (+)7.134e-12
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)3.428e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)2.035e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.315e-13
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)1.418e-11
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)9.154e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)1.418e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)5.323e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)5.408e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)8.996e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)7.839e-11
Glyma.09G066400 hypothetical protein AT4G29790:AT4G29790:serine/arginine repetitive matrix protein 1Chr09:6509441–6524102 (+)5.641e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)6.064e-12
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)8.871e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)1.337e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)4.319e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.953e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)3.831e-12
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)3.537e-11
Glyma.12G236500 hypothetical protein NA 1Chr12:39528803–39534614 (-)7.256e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.876e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.213e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.213e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.213e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.213e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.809e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)4.887e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.808e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.429e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.333e-15
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.862e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.402e-13
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.402e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.424e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.287e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)8.757e-11
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)7.032e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.123e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.693e-15
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)7.017e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)9.524e-15
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)9.064e-11
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)7.52e-12
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)2.484e-14
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.703e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.591e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.591e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.591e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.629e-11
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)1.747e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.582e-12
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)5.735e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.312e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.563e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.239e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.096e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.787e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)5.969e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.234e-14
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.061e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)6.493e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)5.943e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)5.943e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.158e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)1.308e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)5.25e-13
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)4.186e-14
Glyma.17G199600 hypothetical protein AT2G45330:emb1067:RNA 2'-phosphotransferase, Tpt1 / KptA family 1Chr17:31731965–31738073 (+)1.524e-12
Glyma.17G200400 hypothetical protein NA 1Chr17:31864566–31869426 (-)1.524e-12
Glyma.17G201000 hypothetical protein AT3G49600:UBP26:ubiquitin-specific protease 26 1Chr17:31946807–31956876 (-)1.524e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)9.441e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.146e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)4.481e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.889e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)6.261e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)1.645e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.452e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.452e-13
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)2.314e-11
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)3.994e-12
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)6.743e-11
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)6.743e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)6.268e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.145e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)8.452e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.294e-12
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)9.608e-12
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)1.542e-12